View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_2 (Length: 726)
Name: NF15768_low_2
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 240 - 590
Target Start/End: Original strand, 22573406 - 22573753
Alignment:
| Q |
240 |
agaagatacttatgtttttatcaatgattcaatatatatgttgacactttgaggtgtgatgtatgtgggctactcttcttgagtctctttgaaagcttca |
339 |
Q |
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| T |
22573406 |
agaagatacttatgtttttatcaatgattcaatatatatgttgacactttgaggtgtgatgt----gggctactcttcttgagtctctttgaaagcttca |
22573501 |
T |
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| Q |
340 |
tttccatatttcctacccataataattccatccacttgagttggctctcattatatccaattaattaatctaaactttgtatataagacattagtttttt |
439 |
Q |
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| T |
22573502 |
tttccatatttcctacccataataattccatccacttgagttagctctcattatatccaattaattaatctaaactttgtatataagacattagtttttt |
22573601 |
T |
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| Q |
440 |
gttccaatgatgtcgcagctcgaaagctgactgcttataaaccgttgaattgaatatcaattaatcctactagatgaaaaaataaaattgaatgatgtat |
539 |
Q |
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| T |
22573602 |
gttccaatgatgtcgcagctcgaaagctgactgcttataaaccgttgaattgaatatcaattaatcctactagatgaaaaaataaaattgaatggtgtat |
22573701 |
T |
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| Q |
540 |
-ggaccttttacatatagaactactaaaaatagtacccaacaaaagttatca |
590 |
Q |
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| T |
22573702 |
gggaccttttacatatagaactactaaaaatagtacccaacaaaagttatca |
22573753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 580 - 634
Target Start/End: Original strand, 22573937 - 22573991
Alignment:
| Q |
580 |
aaaagttatcaggtctactacaagtgattggtgggtatgatatgtaagtattata |
634 |
Q |
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| T |
22573937 |
aaaagttatcaggtctactacaagtgattggtgggtatgatatgtaagtattata |
22573991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 663 - 717
Target Start/End: Original strand, 22573988 - 22574042
Alignment:
| Q |
663 |
tatattacctttgcatatgtacaaactagttgatatatcgtcttcattcatttca |
717 |
Q |
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| T |
22573988 |
tatattacctttgcatatgtacaaactagttgatatatcgtcttcattcatttca |
22574042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 22573332 - 22573401
Alignment:
| Q |
145 |
atatgtatataacatgtaagggggaaaacggaaagagagatagaccactactttgtgatccttttgtgtc |
214 |
Q |
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| T |
22573332 |
atatgcatatagcatgtaagggggaaaatggaaagagaaatggaccactactttgtgatccttttgtgtc |
22573401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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