View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_20 (Length: 274)
Name: NF15768_low_20
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 52379473 - 52379741
Alignment:
| Q |
1 |
gctttagaatgaaattgattgcataattacctttgctcattgccaaattgccttccattggtgatattgataccagcacctcccctgtatgttggcagtg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52379473 |
gctttacaatgaaattgattgcataattacctttgctcattgccaaattgccttccattggtgatattgataccagcacctcccctgtatgttggcagtg |
52379572 |
T |
|
| Q |
101 |
ggatttgatcatgctcaattcgtatgagatcttccttgaggatctcgtaatgcattttcacctcttgtatggattttccaccaacagcattagctacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52379573 |
ggatttgatcatgctcaattcgtatgagatcttccttgaggatctcgtaatgcattttcacctcttgtatggattttccaccaacagcattagctacatg |
52379672 |
T |
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| Q |
201 |
ttgccaccgatttggatcttctggaccatatactgcaagtgcatcctcaaaacgtctgttcttttctct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52379673 |
ttgccaccgatttggatcttctggaccatatactgcaagtgcatcctcaaaacgtctgttctcttctct |
52379741 |
T |
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