View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_25 (Length: 244)
Name: NF15768_low_25
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 14259667 - 14259882
Alignment:
| Q |
8 |
cgaagaatatttttatggatttagaaaataatggcgtttgt-tagaaataactctttgtcggattataaacttataaaatctatatttcatgtaatagtg |
106 |
Q |
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| T |
14259667 |
cgaagattatttctatggatttagaaaataatgg-gtttgtatacaaatg-ctctttgtcagattataagcttatgaaatctatatttcatgtaatagtg |
14259764 |
T |
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| Q |
107 |
acatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttc |
206 |
Q |
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| T |
14259765 |
atatgaaaatgtttttggtatattttagttatcgattcaaatgtattctccatgatcattttgtggatgacttgaacgattttatactatctggatcttc |
14259864 |
T |
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| Q |
207 |
taccaatgcatgtgtggt |
224 |
Q |
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| T |
14259865 |
tgacaatgcatgtgtggt |
14259882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 14265257 - 14265382
Alignment:
| Q |
71 |
tataaacttataaaatctatatt-tcatgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttg |
169 |
Q |
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| T |
14265257 |
tataaacttataaaatctatattctcacagaatagaaacacgaaaatgtttatggtatattt-agttatcgattcaagtgtattcttcatgaccattttg |
14265355 |
T |
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| Q |
170 |
tggatgacttgatcgattttatactat |
196 |
Q |
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| T |
14265356 |
tagatgacttgaccgattttatactat |
14265382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 22146239 - 22146088
Alignment:
| Q |
73 |
taaacttataaaatctatattt-catgtaatagtgacatgaaaatgtttttggtatattttagttatcgattcaagtgtattctccatggtcattttgtg |
171 |
Q |
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|||||||||||||||||||||| || | |||||| ||| ||||||| || |||||||||| || || ||||||||||||||||||||||| | ||||||| |
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| T |
22146239 |
taaacttataaaatctatattttcacggaatagtaacacgaaaatgattatggtatattt-agataccgattcaagtgtattctccatggccgttttgtg |
22146141 |
T |
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| Q |
172 |
gatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggt |
224 |
Q |
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|||||||| | ||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
22146140 |
gatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggt |
22146088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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