View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15768_low_29 (Length: 224)
Name: NF15768_low_29
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 38147153 - 38147261
Alignment:
| Q |
14 |
attctggtgattgaactgagtgagttattctcctcattcctccaatgacctcctacataatgcttcttcaatgttaaagtcatgccactaagctactact |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38147153 |
attctggtgattgagctgagtgagttattctcctcattcctccaatgacctcctacataatgcttcttcaatgttaaagtcataccactaagctactact |
38147252 |
T |
|
| Q |
114 |
tcatgatcc |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
38147253 |
tcatgatcc |
38147261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University