View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_3 (Length: 702)
Name: NF15768_low_3
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 17 - 684
Target Start/End: Complemental strand, 29730160 - 29729495
Alignment:
| Q |
17 |
gagatgaagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttga |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29730160 |
gagatgaagcacttgcttttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttga |
29730061 |
T |
|
| Q |
117 |
cggctgccatcttcttgaatctattgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattggcaattgcaaaaacaatatctggttta |
216 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29730060 |
cggctgccatcatcttgaatcttttgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattagcaattgcaaaaacaatatctggttta |
29729961 |
T |
|
| Q |
217 |
cgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgaactgcaaagt |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29729960 |
cgccatcttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgatctgcaaagt |
29729861 |
T |
|
| Q |
317 |
tccaggtattattattccaaatccaatccaattgtttacttaaagggtgctgcgagcaaattaaagaattccgacctccaattctctatgattttgcttt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |
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|
| T |
29729860 |
tccaggtattattattccaaatccaatccaa--gtttacttaaatggtgctgcgagcaaattaaagatttccgacctccaattctctatgattctgattt |
29729763 |
T |
|
| Q |
417 |
agctaaaaggacatttttgttaagatatatatgctaattattattggcagtattagataaatattgattatgattatgattgatgtcttggcatgatttc |
516 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729762 |
agctataaggacatttttgttaagatatatatgctaattatgattggcagtattagataaatattgattatgattatgattgatgtcttggcatgatttc |
29729663 |
T |
|
| Q |
517 |
ttcccaaatgttgatgatgttgctttgaagtaattgtgttgcctgcatctgaaagtgtatttgaatttctcaagaacctagtatgcaagcacaaggtttg |
616 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29729662 |
ttctcaaatgttgatgatgttgctttgaagtatttgtgttgcctgcatctgaaagtgtatttgaatttctcaagaacctagtatgcaagctcaaggtttg |
29729563 |
T |
|
| Q |
617 |
catgttttattaataagattatctttattatttttattcttgaatgatttgtggtttttgatatcaca |
684 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729562 |
catgttttattaataagattatctttattatttttattcttgaatgatttgtggtttttgatatcaca |
29729495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 29713318 - 29713433
Alignment:
| Q |
23 |
aagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctg |
122 |
Q |
| |
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||||| ||| |||||| ||||||||| |||||||| ||||||||||| |||||||| ||| | ||||| || |||||| ||||||||||||| ||||| |
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|
| T |
29713318 |
aagcatttgttattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgatggctg |
29713417 |
T |
|
| Q |
123 |
ccatcttcttgaatct |
138 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
29713418 |
ccctcttcttgaatct |
29713433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 193 - 304
Target Start/End: Original strand, 29713329 - 29713436
Alignment:
| Q |
193 |
attgcaaaaacaatatctggtttacgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctctt |
292 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| |||||||||||||| || | | ||||| || ||||||| ||||||||||||| ||||||||||| |
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|
| T |
29713329 |
attgcaaaaacaatgtctgggttatgccatcttaaattgaatggattt----tttagtaactgtggtggattggttgctattcttgatggctgccctctt |
29713424 |
T |
|
| Q |
293 |
cttgaatctctt |
304 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29713425 |
cttgaatctctt |
29713436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 29752615 - 29752744
Alignment:
| Q |
19 |
gatgaagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacg |
118 |
Q |
| |
|
||||||||| || |||||| |||||||||| ||||||||||||||| ||| || |||| | | ||||||||| || ||| |||||||||||||||| |
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|
| T |
29752615 |
gatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgcttgctattcttgacg |
29752714 |
T |
|
| Q |
119 |
gctgccatcttcttgaatctattgatctgc |
148 |
Q |
| |
|
| |||| ||||| |||||| ||||||||| |
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|
| T |
29752715 |
gttgcccgcttctcgaatctcttgatctgc |
29752744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 29752681 - 29752744
Alignment:
| Q |
248 |
cttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgaactgc |
311 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| | ||||| ||||| ||||||||||| |||| |
|
|
| T |
29752681 |
cttaactatgatgaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgc |
29752744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 680
Target Start/End: Original strand, 29752983 - 29753104
Alignment:
| Q |
568 |
aaagtgtatttgaatttctcaagaacctagtatgcaagcacaa--ggtttgcatgttttattaataagattatc------tttattatttttattcttga |
659 |
Q |
| |
|
||||||| |||||| ||||||||| || |||| |||||| | |||||||||||||||||||| |||||||| ||| || ||||| ||||||| |
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| T |
29752983 |
aaagtgtgcttgaatgtctcaagaaacttgtattcaagcatatatggtttgcatgttttattaatcagattatcttttttttttttttttttcttcttga |
29753082 |
T |
|
| Q |
660 |
atga-tttgtggtttttgatat |
680 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
29753083 |
atgattttgtggtttttgatat |
29753104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 30621545 - 30621499
Alignment:
| Q |
257 |
gttggattgcttgctattcttgaccgctgccctcttcttgaatctct |
303 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
30621545 |
gttgggttgcttgctattcttgatggatgccctcttcttgaatctct |
30621499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 41100288 - 41100173
Alignment:
| Q |
23 |
aagcacttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctg |
122 |
Q |
| |
|
||||| ||| |||||| |||| |||| ||||||||||||||||| || |||||||| ||| ||| |||| | |||| |||||| ||||||| ||||| |
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|
| T |
41100288 |
aagcatttgttattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggtagattgcttgctcttcttgatggctg |
41100189 |
T |
|
| Q |
123 |
ccatcttcttgaatct |
138 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
41100188 |
ccctcttcttgaatct |
41100173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 304
Target Start/End: Complemental strand, 41100277 - 41100170
Alignment:
| Q |
193 |
attgcaaaaacaatatctggtttacgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctctt |
292 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| || ||||||||||| || | | ||| |||| | ||||||||||| ||||||| ||||||||||| |
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|
| T |
41100277 |
attgcaaaaataatgtctgggttacgccatcttgaattgaatggattt----ttgcgtaattatggtagattgcttgctcttcttgatggctgccctctt |
41100182 |
T |
|
| Q |
293 |
cttgaatctctt |
304 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41100181 |
cttgaatctctt |
41100170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 556
Target Start/End: Complemental strand, 41099942 - 41099888
Alignment:
| Q |
502 |
tcttggcatgatttcttcccaaatgttgatgatgttgctttgaagtaattgtgtt |
556 |
Q |
| |
|
|||||||||| |||| || ||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
41099942 |
tcttggcatgctttcatctcaaatgttgattatgttgctttaaagtaattttgtt |
41099888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 27718359 - 27718396
Alignment:
| Q |
269 |
gctattcttgaccgctgccctcttcttgaatctcttga |
306 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
27718359 |
gctattcttgaccgatgccctcttctcgaatctcttga |
27718396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 38285719 - 38285760
Alignment:
| Q |
263 |
ttgcttgctattcttgaccgctgccctcttcttgaatctctt |
304 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
38285719 |
ttgcttgctattcttgatggatgccctcttcttgaatctctt |
38285760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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