View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15768_low_33 (Length: 202)

Name: NF15768_low_33
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15768_low_33
NF15768_low_33
[»] chr8 (22 HSPs)
chr8 (1-186)||(34634282-34634462)
chr8 (1-76)||(1281282-1281357)
chr8 (1-114)||(31543069-31543177)
chr8 (1-61)||(30479762-30479822)
chr8 (1-76)||(2248591-2248666)
chr8 (1-111)||(11785665-11785770)
chr8 (1-77)||(16653088-16653164)
chr8 (4-111)||(3726863-3726965)
chr8 (1-111)||(31738562-31738667)
chr8 (1-65)||(1026890-1026954)
chr8 (1-65)||(9718520-9718584)
chr8 (1-65)||(11575447-11575511)
chr8 (1-57)||(30664500-30664556)
chr8 (1-56)||(6315201-6315256)
chr8 (67-113)||(24243048-24243093)
chr8 (1-55)||(29358391-29358444)
chr8 (1-65)||(10028261-10028326)
chr8 (1-105)||(36308982-36309081)
chr8 (24-111)||(43732849-43732931)
chr8 (34-113)||(1027020-1027094)
chr8 (1-55)||(37923129-37923183)
chr8 (1-33)||(35694828-35694860)
[»] chr2 (21 HSPs)
chr2 (1-114)||(23748234-23748342)
chr2 (4-115)||(8426875-8426981)
chr2 (7-65)||(1583222-1583280)
chr2 (1-114)||(9631699-9631807)
chr2 (1-114)||(36347538-36347646)
chr2 (1-55)||(15224745-15224799)
chr2 (1-55)||(34209603-34209657)
chr2 (1-110)||(36046205-36046309)
chr2 (1-77)||(36566879-36566956)
chr2 (1-65)||(39732770-39732834)
chr2 (1-65)||(39821808-39821872)
chr2 (2-55)||(16565917-16565970)
chr2 (12-113)||(35736337-35736433)
chr2 (33-77)||(22356175-22356219)
chr2 (1-57)||(27926692-27926748)
chr2 (1-44)||(17379951-17379994)
chr2 (1-75)||(40022511-40022586)
chr2 (7-49)||(28262500-28262542)
chr2 (1-55)||(42316815-42316869)
chr2 (69-115)||(45257303-45257349)
chr2 (4-65)||(7681386-7681447)
[»] chr5 (27 HSPs)
chr5 (5-114)||(8502832-8502936)
chr5 (4-109)||(1657955-1658055)
chr5 (1-109)||(7544275-7544378)
chr5 (1-110)||(13634850-13634954)
chr5 (1-106)||(36363171-36363271)
chr5 (1-55)||(20146917-20146971)
chr5 (1-54)||(9857019-9857072)
chr5 (1-113)||(14245086-14245193)
chr5 (4-124)||(16938621-16938736)
chr5 (1-109)||(26415032-26415136)
chr5 (1-55)||(4373617-4373671)
chr5 (1-55)||(16501841-16501895)
chr5 (1-55)||(20513496-20513550)
chr5 (1-55)||(28279527-28279581)
chr5 (1-55)||(36392201-36392255)
chr5 (10-74)||(9798644-9798708)
chr5 (1-55)||(43546-43601)
chr5 (44-111)||(5688567-5688634)
chr5 (24-111)||(14245208-14245290)
chr5 (1-111)||(37607033-37607138)
chr5 (1-111)||(37779242-37779347)
chr5 (1-49)||(10650553-10650601)
chr5 (29-108)||(11757070-11757144)
chr5 (1-55)||(4423350-4423404)
chr5 (24-115)||(10650423-10650511)
chr5 (69-113)||(7544134-7544178)
chr5 (1-33)||(10072720-10072752)
[»] chr4 (21 HSPs)
chr4 (1-111)||(54935208-54935313)
chr4 (1-113)||(49735466-49735573)
chr4 (1-109)||(27735884-27735987)
chr4 (1-111)||(31348316-31348426)
chr4 (1-55)||(45742029-45742083)
chr4 (4-65)||(29798427-29798488)
chr4 (34-114)||(37711135-37711215)
chr4 (1-113)||(41174484-41174591)
chr4 (9-114)||(6938394-6938494)
chr4 (1-111)||(5730830-5730935)
chr4 (1-111)||(54320573-54320678)
chr4 (22-111)||(37711283-37711367)
chr4 (1-49)||(16400939-16400987)
chr4 (24-65)||(2247844-2247885)
chr4 (17-74)||(1968383-1968440)
chr4 (74-115)||(53260714-53260755)
chr4 (37-115)||(54935063-54935137)
chr4 (1-65)||(24565387-24565451)
chr4 (69-113)||(31348523-31348567)
chr4 (1-65)||(34110944-34111007)
chr4 (37-113)||(56135747-56135818)
[»] chr1 (21 HSPs)
chr1 (1-113)||(8529938-8530045)
chr1 (4-111)||(38509894-38509996)
chr1 (5-111)||(40094933-40095034)
chr1 (1-111)||(41498543-41498649)
chr1 (1-113)||(30010471-30010578)
chr1 (1-109)||(12234149-12234252)
chr1 (1-65)||(49946629-49946693)
chr1 (1-63)||(36285617-36285679)
chr1 (1-113)||(7444634-7444741)
chr1 (1-55)||(32951369-32951423)
chr1 (1-71)||(43552031-43552097)
chr1 (3-111)||(2858932-2859035)
chr1 (1-113)||(35349464-35349567)
chr1 (1-107)||(40964737-40964844)
chr1 (1-75)||(26940874-26940948)
chr1 (1-54)||(50744332-50744386)
chr1 (38-112)||(26324013-26324087)
chr1 (1-55)||(51597807-51597861)
chr1 (69-114)||(20607419-20607464)
chr1 (24-65)||(41676443-41676484)
chr1 (1-65)||(6563715-6563779)
[»] chr6 (21 HSPs)
chr6 (1-115)||(9721134-9721243)
chr6 (1-115)||(9719027-9719136)
chr6 (1-115)||(30487302-30487410)
chr6 (1-65)||(31849249-31849313)
chr6 (1-55)||(1390458-1390512)
chr6 (2-111)||(9298625-9298735)
chr6 (1-54)||(10348850-10348903)
chr6 (1-110)||(10818355-10818459)
chr6 (1-109)||(34176474-34176576)
chr6 (1-65)||(1300759-1300823)
chr6 (1-113)||(33236090-33236196)
chr6 (1-65)||(21606885-21606949)
chr6 (1-57)||(33041601-33041657)
chr6 (1-55)||(4097563-4097617)
chr6 (2-111)||(14515611-14515715)
chr6 (2-55)||(19278085-19278138)
chr6 (1-56)||(5585352-5585407)
chr6 (12-65)||(665881-665934)
chr6 (7-60)||(7775993-7776046)
chr6 (1-55)||(2900049-2900103)
chr6 (77-114)||(1390316-1390353)
[»] scaffold0067 (2 HSPs)
scaffold0067 (1-111)||(39186-39292)
scaffold0067 (34-115)||(39362-39438)
[»] chr3 (21 HSPs)
chr3 (1-111)||(24560356-24560461)
chr3 (1-65)||(37102190-37102254)
chr3 (1-77)||(41110350-41110426)
chr3 (1-65)||(30200129-30200193)
chr3 (1-55)||(220448-220502)
chr3 (1-55)||(9312522-9312576)
chr3 (1-76)||(28581216-28581291)
chr3 (1-111)||(18654600-18654705)
chr3 (1-55)||(41040001-41040055)
chr3 (1-55)||(46556284-46556338)
chr3 (1-65)||(21773921-21773985)
chr3 (1-65)||(52474054-52474118)
chr3 (1-55)||(36568954-36569008)
chr3 (1-114)||(16275702-16275810)
chr3 (1-77)||(25654999-25655075)
chr3 (1-51)||(10748345-10748395)
chr3 (1-55)||(37807219-37807273)
chr3 (22-55)||(23028086-23028119)
chr3 (24-113)||(34641152-34641236)
chr3 (1-65)||(52185155-52185216)
chr3 (1-77)||(27541960-27542036)
[»] chr7 (20 HSPs)
chr7 (1-113)||(18231725-18231832)
chr7 (1-65)||(33655149-33655213)
chr7 (1-55)||(24970216-24970270)
chr7 (1-115)||(47390995-47391104)
chr7 (1-113)||(4833529-4833636)
chr7 (1-55)||(34235058-34235112)
chr7 (1-55)||(42306469-42306523)
chr7 (2-111)||(40196532-40196636)
chr7 (1-57)||(10315772-10315828)
chr7 (1-111)||(41496957-41497062)
chr7 (1-54)||(1051552-1051604)
chr7 (1-114)||(13425117-13425225)
chr7 (1-48)||(31553240-31553287)
chr7 (1-50)||(13771004-13771051)
chr7 (22-55)||(30891045-30891078)
chr7 (1-54)||(40572287-40572339)
chr7 (1-49)||(22163167-22163214)
chr7 (1-49)||(22221875-22221922)
chr7 (34-114)||(39856037-39856112)
chr7 (67-111)||(48881558-48881602)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-57)||(16089-16145)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-55)||(1311-1365)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-109)||(15402-15504)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-65)||(16337-16401)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-55)||(6722-6776)
[»] scaffold0341 (1 HSPs)
scaffold0341 (1-65)||(18908-18972)
[»] scaffold0198 (1 HSPs)
scaffold0198 (24-108)||(3150-3229)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 34634282 - 34634462
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||     ||||||||||||||    
T  34634282 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaataaaaaatgaaccctcacatcccttcccctcc-----taaactctccatcc 34634376  T
Q  101 aaacacacccttaataagaaatataatggctactccaactcattataaatgtataatcacatgagaagttaaaaaactatattctc 186  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  34634377 aaacacacccttaataagaaatataatggctactccaacccactataaatgtataatcacatgagaagttaaaaaactacattctc 34634462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1281282 - 1281357
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcc 76  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||| | ||||||||    
T  1281282 aatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaactaaatcctcccctcccttcc 1281357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31543177 - 31543069
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||| ||| | |||||||||| ||||||||||||||||||||| | |||||||     || ||||||||| || ||||| ||||||||    
T  31543177 aatatgttaacttttttaaaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctc-----ccctcccttcccctcttaaaccctccatcc 31543083  T
Q  101 aaacacacccttaa 114  Q
    ||||| ||||||||    
T  31543082 aaacatacccttaa 31543069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30479822 - 30479762
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaac 61  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||    
T  30479822 aatatgttaactttttaaaagacatttcatagtgtctgtaatttaaaaatgaaaagtgaac 30479762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2248591 - 2248666
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcc 76  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||||| | ||||||||    
T  2248591 aataagttaacttttaaaaaaatatttcatagtgtccgtaatttaaaaataaaaagtgaaccctcccctcccttcc 2248666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 11785665 - 11785770
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||   |||||     ||||||| ||| || || ||||| ||||||||    
T  11785665 aatatgctaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaatcaaaccc-----tcccttctcttaccctcctaaaccctccatcc 11785759  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  11785760 aaacacaccct 11785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16653088 - 16653164
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttccc 77  Q
    |||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| | ||||||| | |||||||||    
T  16653088 aatatgttaactttttcaaaaacatttcataatgtccgtaatttaaaaatgaaaattaaaccctctcctcccttccc 16653164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 3726965 - 3726863
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaa 103  Q
    ||||||||| ||||||| | ||| ||| |||||||||||||||||||||||||| |||     | ||| |||||||||| || ||||| |||||||||||    
T  3726965 atgttaactatttaaaaaacattccatggtgtccgtaatttaaaaatgaaaaataaac-----cgtcctttcccttcccctcctaaaccctccatccaaa 3726871  T
Q  104 cacaccct 111  Q
    ||||||||    
T  3726870 cacaccct 3726863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 31738562 - 31738667
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||| || |||| |||||| ||||||||||||||||||||||||||  | |||||||    |||||  |||||| || ||||| ||||||||    
T  31738562 aatatgttaactcttcaaaaaatattttatagtgtccgtaatttaaaaatgaaatttaaaccctc----ccctt-tcttcccctcctaaaccctccatcc 31738656  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  31738657 aaacacaccct 31738667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1026954 - 1026890
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||| | || ||||||||||||||||| |||||||||||||||| | |||||||    
T  1026954 aatatgttaacttttgataaaatatttcatagtgtccgcaatttaaaaatgaaaagtaaaccctc 1026890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9718584 - 9718520
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||| |||||||||||||   ||||||||||||||||||||||||||||||||  ||||||||    
T  9718584 aatatgctaactttttaaaaaccatttcatagtgtccgtaatttaaaaatgaaaatcgaaccctc 9718520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11575511 - 11575447
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||||||||||| | |||||||||| ||| |||||||| |||||||| | |||||||    
T  11575511 aatatgttaactttttaaaaaacatttcatagtatccttaatttaagaatgaaaagtaaaccctc 11575447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30664500 - 30664556
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaat 57  Q
    |||||||||||||||||||| ||||||  || |||||||||||||||| ||||||||    
T  30664500 aatatgttaactttttaaaaaatattttgtaatgtccgtaatttaaaactgaaaaat 30664556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6315201 - 6315256
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaa 56  Q
    |||||||||| ||||| ||| | ||||||||||||||||| |||||||||||||||    
T  6315201 aatatgttaatttttttaaaaacatttcatagtgtccgtattttaaaaatgaaaaa 6315256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 24243093 - 24243048
Alignment:
Q  67 catcccttcccttcccttcataaactctccatccaaacacaccctta 113  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  24243093 catcccttcccttccct-cttaaactctccatccaaacacaccctta 24243048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29358444 - 29358391
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||    
T  29358444 aatatgttaa-tttttaaaaaatattttatagtgtccgtaatttaaaaataaaaa 29358391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10028261 - 10028326
Alignment:
Q  1 aatatgttaactttttaaaaga-tatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||| |||| | |||||||||||||||||||||||||| | |||| | |||||||    
T  10028261 aatatgttaacttttaaaaaaaatatttcatagtgtccgtaatttaaaagtaaaaagtaaaccctc 10028326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36308982 - 36309081
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||| |||||| |||| |||||||| | ||| ||||||||||| ||||||| | ||||||| | ||||||||| |||     ||||| ||||||||    
T  36308982 aatatgtttacttttaaaaatatatttcacaatgtacgtaatttaaagatgaaaagtaaaccctcccctcccttcccctcc-----taaaccctccatcc 36309076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 43732849 - 43732931
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccct 111  Q
    |||| ||| ||||||||||||||||| ||||| | ||||||| | ||||||||| |||     ||||| |||||||||||||||||||    
T  43732849 attttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcc-----taaaccctccatccaaacacaccct 43732931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 1027020 - 1027094
Alignment:
Q  34 gtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccctta 113  Q
    |||||||||||||||| ||||| ||||||||    |||| |||||||||||| ||||| ||  |||||||||||||||||    
T  1027020 gtccgtaatttaaaaaagaaaagtgaaccct----tccc-tcccttcccttcctaaacccttaatccaaacacaccctta 1027094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37923183 - 37923129
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||| |||||| ||||||| | |||||||||||| | |||||||||||||||||    
T  37923183 aatattttaactctttaaaaaacatttcatagtgttcataatttaaaaatgaaaa 37923129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35694860 - 35694828
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  35694860 aatatgttaactttttaaaaaatatttcatagt 35694828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 23748234 - 23748342
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||     |||| ||||||||| || ||||| ||||||||    
T  23748234 aatatgttaactttttaaaagacatttcatagtgtccgtagtttaaaaatgaaaagtgaaccc-----tcccctcccttcccctcctaaaccctccatcc 23748328  T
Q  101 aaacacacccttaa 114  Q
    ||||||||||||||    
T  23748329 aaacacacccttaa 23748342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 8426981 - 8426875
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaa 103  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||| |||| | |||||     |||||||||||||| || |||||||||||| ||||    
T  8426981 atgttaactttttaaaaaacatttcatagtgtccttaatttaaaaattaaaagtaaaccc-----tcccttcccttcccctcctaaactctccattcaaa 8426887  T
Q  104 cacacccttaat 115  Q
     ||||| |||||    
T  8426886 tacaccattaat 8426875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 1583222 - 1583280
Alignment:
Q  7 ttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  1583222 ttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccctc 1583280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9631699 - 9631807
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||| ||||| | |||||||   |||||| || |||     ||||| ||||||||    
T  9631699 aatatgttaactttttaaaggacatttcatggtgtccgtaatttaaaaacgaaaagttaaccctcttctccctttccctcc-----taaaccctccatcc 9631793  T
Q  101 aaacacacccttaa 114  Q
    ||||||||||||||    
T  9631794 aaacacacccttaa 9631807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36347646 - 36347538
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||| ||||||| |||| ||||||| |||||||| |||||||||||| ||||| |     || ||||||||||| || ||||| || |||||    
T  36347646 aatatgttaactatttaaaaaatatgtcatagtatccgtaatataaaaatgaaaagtgaactc-----tctcttcccttcccctcctaaacccttcatcc 36347552  T
Q  101 aaacacacccttaa 114  Q
    ||||||||||||||    
T  36347551 aaacacacccttaa 36347538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15224799 - 15224745
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  15224799 aatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 15224745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34209603 - 34209657
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  34209603 aatatgttaactttttaaaaaatatttcatagtgtttgtaatttaaaaatgaaaa 34209657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36046309 - 36046205
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | ||||  |||||||||||||||||||||||||||| ||| |     |||| ||  ||||| || ||||| ||||||||    
T  36046309 aatatgttaactttttaaaaaacattttctagtgtccgtaatttaaaaatgaaaaataaactc-----tcccctcatttcccctcctaaaccctccatcc 36046215  T
Q  101 aaacacaccc 110  Q
    ||||||||||    
T  36046214 aaacacaccc 36046205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36566956 - 36566879
Alignment:
Q  1 aatatgttaactttttaaaagata-tttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttccc 77  Q
    ||||||||||||||||| || | | ||||||| ||||||||||||||||||||||| | || |||| |||||||||||    
T  36566956 aatatgttaactttttataaaaaactttcataatgtccgtaatttaaaaatgaaaagtaaatcctctcatcccttccc 36566879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39732834 - 39732770
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||||| || | |||||||| ||| ||||||||||||||||||| | |||||||    
T  39732834 aatatgttaactttttataaaacatttcataatgttcgtaatttaaaaatgaaaagtaaaccctc 39732770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39821808 - 39821872
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||| ||||||   ||||||||||||||||||||||||||| ||||| | |||||||    
T  39821808 aatatgttaactctttaaatattatttcatagtgtccgtaatttaaaaaagaaaactaaaccctc 39821872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 16565917 - 16565970
Alignment:
Q  2 atatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||||||| ||||    
T  16565917 atatgttaactttttaaaaaacgtttcatagtatccgtaatttaaaaataaaaa 16565970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 35736337 - 35736433
Alignment:
Q  12 tttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccct 111  Q
    ||||||||| |  |||||||||||||| |||||||||| ||||| ||| ||||| | ||||||| | |||     ||||| |||||||||||||||||||    
T  35736337 tttttaaaaaacttttcatagtgtccgaaatttaaaaacgaaaagtgagccctcccctcccttcacctcc-----taaaccctccatccaaacacaccct 35736431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 22356175 - 22356219
Alignment:
Q  33 tgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttccc 77  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||    
T  22356175 tgtccgtaatttaaaaaagaaaaatgaaccctcccctcccttccc 22356219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27926692 - 27926748
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaat 57  Q
    ||||||||||||||||||   | |||| ||||| |||||||||||||||||||||||    
T  27926692 aatatgttaactttttaaccaaaatttaatagtatccgtaatttaaaaatgaaaaat 27926748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17379951 - 17379994
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaattt 44  Q
    |||||| ||||||||||||| | |||||||||||||||||||||    
T  17379951 aatatgctaactttttaaaaaacatttcatagtgtccgtaattt 17379994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40022511 - 40022586
Alignment:
Q  1 aatatgttaactttttaaaagat-atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttc 75  Q
    |||||||| ||||||||||| |  ||||||||||||| |||||||||||||||||  | ||||||| | |||||||    
T  40022511 aatatgtttactttttaaaaaaacatttcatagtgtctgtaatttaaaaatgaaatgtaaaccctcccctcccttc 40022586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 28262542 - 28262500
Alignment:
Q  7 ttaactttttaaaagatatttcatagtgtccgtaatttaaaaa 49  Q
    |||||||||||||| |||||||||||||| | |||||||||||    
T  28262542 ttaactttttaaaaaatatttcatagtgttcataatttaaaaa 28262500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42316869 - 42316815
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||| ||||||||||||||| | ||||||||||||  | ||||||||||||||||    
T  42316869 aatacgttaactttttaaaaaacatttcatagtgtttgcaatttaaaaatgaaaa 42316815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 45257349 - 45257303
Alignment:
Q  69 tcccttcccttcccttcataaactctccatccaaacacacccttaat 115  Q
    |||||||| ||||| || ||||||||| |||||||||||||||||||    
T  45257349 tcccttcctttcccctcctaaactctcaatccaaacacacccttaat 45257303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 7681386 - 7681447
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||| |||| |||||||||| | |||| ||||||||||| |||| | |||||||    
T  7681386 atgttaacttttaaaaaaatatttcataatatccgcaatttaaaaataaaaagtaaaccctc 7681447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 5e-27; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 8502936 - 8502832
Alignment:
Q  5 tgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaac 104  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||     |||| ||| ||||||||||||||  |||||||||||    
T  8502936 tgttaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaagtgaaccc-----tcccatccattcccttcataaaccatccatccaaac 8502842  T
Q  105 acacccttaa 114  Q
    ||||||||||    
T  8502841 acacccttaa 8502832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 1657955 - 1658055
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaa 103  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||||||||| | |||||     |||| ||||||||| || ||||| |||||||||||    
T  1657955 atgttaactttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccc-----tcccctcccttcccctcctaaaccctccatccaaa 1658049  T
Q  104 cacacc 109  Q
    ||||||    
T  1658050 cacacc 1658055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7544275 - 7544378
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||   |||||||    ||||| ||||||| || ||||| ||||||||    
T  7544275 aatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaaccaaaccctc----ccctt-ccttcccctcctaaaccctccatcc 7544369  T
Q  101 aaacacacc 109  Q
    |||||||||    
T  7544370 aaacacacc 7544378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13634850 - 13634954
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||| | | |||     |||| ||||||||| || ||||| ||| ||||    
T  13634850 aatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaagtaacccc-----tcccctcccttcccctcctaaaccctcaatcc 13634944  T
Q  101 aaacacaccc 110  Q
    ||||||||||    
T  13634945 aaacacaccc 13634954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 36363171 - 36363271
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||| ||||| ||| | ||||||||| |||     ||||| ||||||||    
T  36363171 aatatgttaactttctaaaagacattttatagtatccgtaatttaaaaatgaaaagtgaactctctcctcccttcccctcc-----taaaccctccatcc 36363265  T
Q  101 aaacac 106  Q
    ||||||    
T  36363266 aaacac 36363271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20146971 - 20146917
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  20146971 aatatgttaactttttaaaaaacatttcatagtgaccgtaatttaaaaatgaaaa 20146917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9857019 - 9857072
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaa 54  Q
    |||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  9857019 aatatgttaactttttaaaaaacatttcatagtgtccgtaacttaaaaatgaaa 9857072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14245193 - 14245086
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||| ||||| | || ||     |||| ||||||||| || ||||| ||| ||||    
T  14245193 aatatgttaactttctaaaaaacatttcacagtgtccgtaatttaaaaaagaaaagtaaatcc-----tcccctcccttcccctcctaaaccctcaatcc 14245099  T
Q  101 aaacacaccctta 113  Q
    |||||||||||||    
T  14245098 aaacacaccctta 14245086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 16938621 - 16938736
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaa 103  Q
    ||||||||| ||||||| | ||||||||||||| |||||||||||||||||  | |||||     |||| ||| ||||  || ||||| |||||||||||    
T  16938621 atgttaactctttaaaaaacatttcatagtgtcagtaatttaaaaatgaaatctaaaccc-----tcccctccattcctctcctaaaccctccatccaaa 16938715  T
Q  104 cacacccttaataagaaatat 124  Q
    ||||||||||| || ||||||    
T  16938716 cacacccttaaaaacaaatat 16938736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26415032 - 26415136
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||| || | ||||||||||||| |||| ||||||||||||| | ||| ||| | ||| |||    ||| |||||||| ||||||||    
T  26415032 aatatgttaactttttataaaacatttcatagtgtctgtaacttaaaaatgaaaagtaaactctcccctcctttc----cccctcataaaccctccatcc 26415127  T
Q  101 aaacacacc 109  Q
    |||||||||    
T  26415128 aaacacacc 26415136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4373671 - 4373617
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||    
T  4373671 aatatgttaacttttaaaaaaatatttcacagtgtccgtaatttaaaaattaaaa 4373617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16501895 - 16501841
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||| |||| | |||||||| |||||||||||||||||||||||    
T  16501895 aatatgttaacttttaaaaaaacatttcataatgtccgtaatttaaaaatgaaaa 16501841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20513550 - 20513496
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||    
T  20513550 aatatgttaactttttaaaaaacatttcatagtgtctgtagtttaaaaatgaaaa 20513496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28279581 - 28279527
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | |||||||| ||||| |||||||||||||||||    
T  28279581 aatatgttaactttttaaaaaacatttcataatgtccataatttaaaaatgaaaa 28279527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36392255 - 36392201
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||||||||||||    
T  36392255 aatatgttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaa 36392201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 9798708 - 9798644
Alignment:
Q  10 actttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatccctt 74  Q
    ||||||||||| | ||||| |||| ||||||||||||||||||||| | ||| ||||||||||||    
T  9798708 actttttaaaaaacatttcgtagtatccgtaatttaaaaatgaaaagtaaactctcacatccctt 9798644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43546 - 43601
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaa-tttaaaaatgaaaa 55  Q
    ||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||    
T  43546 aatatgttaacttttcaaaaaatatttcatagtgttcgtaattttaaaaatgaaaa 43601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 5688567 - 5688634
Alignment:
Q  44 taaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccct 111  Q
    |||||| ||||||||| ||||| | |||||||||||||| || ||||| ||| |||||||||||||||    
T  5688567 taaaaaagaaaaatgagccctctcctcccttcccttcccctcctaaaccctcaatccaaacacaccct 5688634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 14245208 - 14245290
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccct 111  Q
    |||||| ||||||||||||||||||||||||||  |||||     |||| ||||||||| || ||||| ||| |||||||||||||||    
T  14245208 atttcacagtgtccgtaatttaaaaatgaaaaacaaaccc-----tcccctcccttcccctcctaaaccctcaatccaaacacaccct 14245290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37607033 - 37607138
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||| || | |||||||||| || ||| |||||||||||||| | |||| |  ||||   |||||| || || ||||| ||||||||    
T  37607033 aatatgttaactttttataaaacatttcatagtatctgtattttaaaaatgaaaagtaaaccat--catc---tccctttccctcgtaaaccctccatcc 37607127  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  37607128 aaacacaccct 37607138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37779242 - 37779347
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||| || | |||||||||| || ||| |||||||||||||| | |||| |  ||||   |||||| || || ||||| ||||||||    
T  37779242 aatatgttaactttttataaaacatttcatagtatctgtagtttaaaaatgaaaagtaaaccat--catc---tccctttccctcgtaaaccctccatcc 37779336  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  37779337 aaacacaccct 37779347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10650553 - 10650601
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaa 49  Q
    ||||||||||||||||| || | |||||||||| |||||||||||||||    
T  10650553 aatatgttaactttttataaaacatttcatagtatccgtaatttaaaaa 10650601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 11757070 - 11757144
Alignment:
Q  29 atagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacac 108  Q
    ||||||||||||||||||||||||||  | |||||     |||| ||||||||| || ||||| ||||||||||||||||    
T  11757070 atagtgtccgtaatttaaaaatgaaatctaaaccc-----tcccctcccttcccctcttaaaccctccatccaaacacac 11757144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4423350 - 4423404
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||| ||| |||| |||| |||||||||| ||| |||||||||||||||||||    
T  4423350 aatatgctaaattttaaaaaaatatttcataatgttcgtaatttaaaaatgaaaa 4423404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 10650511 - 10650423
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacacccttaat 115  Q
    ||||||||||||||||||||||||||| |||| | || |||| | ||||||   ||||| || ||||  |||||||||||| |||| |||||    
T  10650511 atttcatagtgtccgtaatttaaaaataaaaagtaaatcctcccctccctt---ttcccctcctaaatcctccatccaaacgcaccattaat 10650423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 7544178 - 7544134
Alignment:
Q  69 tcccttcccttcccttcataaactctccatccaaacacaccctta 113  Q
    |||| |||||||||||| ||||| ||| |||||||||||||||||    
T  7544178 tcccctcccttcccttcctaaaccctcaatccaaacacaccctta 7544134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10072752 - 10072720
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  10072752 aatatgttaactttttaaaaaatatttcatagt 10072720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 54935208 - 54935313
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||     |||| ||||||||| || ||||| ||||||||    
T  54935208 aatatgataactttttaaaatacatttcatagtgtccgtaatttaaaaatgaaaaataaaccc-----tcccctcccttcccctcctaaaccctccatcc 54935302  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  54935303 aaacacaccct 54935313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 49735573 - 49735466
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||| ||||||||||||||||| |||||||  ||||||||||||||||||||||| |||||||     |||| ||||||||| || ||||| ||| ||||    
T  49735573 aataggttaactttttaaaagacatttcatgttgtccgtaatttaaaaatgaaaagtgaaccc-----tcccctcccttcccctcctaaaccctcaatcc 49735479  T
Q  101 aaacacaccctta 113  Q
    |||||||||||||    
T  49735478 aaacacaccctta 49735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 27735884 - 27735987
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| ||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||   ||||  ||||||||| || ||||| ||||||||    
T  27735884 aatatgctaactctttaaaaaacattttatagtgtccgtaatttaaaaatgaaaaatgaaccct---atcc--tcccttcccctcctaaaccctccatcc 27735978  T
Q  101 aaacacacc 109  Q
    |||||||||    
T  27735979 aaacacacc 27735987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31348426 - 31348316
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||||||||| | ||||||  | ||||||||| ||      ||||| ||||||||    
T  31348426 aatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaacccttccctcccttcccctcataaactaaaccctccatcc 31348327  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  31348326 aaacacaccct 31348316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45742029 - 45742083
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  45742029 aatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 45742083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 29798427 - 29798488
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  29798427 atgttaattttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactgaaccctc 29798488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 37711215 - 37711135
Alignment:
Q  34 gtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacacccttaa 114  Q
    |||||||||||||||| ||||||  ||||||| | |||||||||||||| || ||||| ||| ||||||||||||||||||    
T  37711215 gtccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccttcccctcctaaaccctcaatccaaacacacccttaa 37711135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41174484 - 41174591
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| |||||||||||||   |||||||||||||| ||| ||||||||||||| | |||     |||||| ||||||||| || ||||| ||||||||    
T  41174484 aatatgctaactttttaaaaaccatttcatagtgtccctaaattaaaaatgaaaactaaac-----catcccctcccttcccctcctaaaccctccatcc 41174578  T
Q  101 aaacacaccctta 113  Q
    |||||||||||||    
T  41174579 aaacacaccctta 41174591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 6938394 - 6938494
Alignment:
Q  9 aactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacac 108  Q
    |||||||||||| | |||| ||| | ||||||||||||||||||||| |||||||||     || ||| ||||| ||||||||  |||||||||||||||    
T  6938394 aactttttaaaaaacattttataatatccgtaatttaaaaatgaaaagtgaaccctc-----ccctccattcccctcataaaccttccatccaaacacac 6938488  T
Q  109 ccttaa 114  Q
    ||||||    
T  6938489 ccttaa 6938494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5730935 - 5730830
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||| || |||| |||||| |||| |||||||||||||||||||||  | ||||||| |||| ||| || |||     ||||| ||||||||    
T  5730935 aatatgttaactcttcaaaaaatattttatagggtccgtaatttaaaaatgaaatctaaaccctcccatctctttccctcc-----taaaccctccatcc 5730841  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  5730840 aaacacaccct 5730830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 54320573 - 54320678
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| ||||||||||||| |  |||||||||||||||||||||||||| ||||   |||||     |||| ||||||||| || ||||| ||| ||||    
T  54320573 aatatgctaactttttaaaaaacgtttcatagtgtccgtaatttaaaaattaaaatcaaaccc-----tcccctcccttcccctcctaaaccctcaatcc 54320667  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  54320668 aaacacaccct 54320678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 37711283 - 37711367
Alignment:
Q  22 atatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccct 111  Q
    |||||| ||||||||||||||||||||||||||  | |||||     |||| ||||||||| || ||||| |||||||||||||||||||    
T  37711283 atattttatagtgtccgtaatttaaaaatgaaatctaaaccc-----tcccctcccttcccctcctaaaccctccatccaaacacaccct 37711367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16400939 - 16400987
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaa 49  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  16400939 aatatgttaactttttaaaaactatttcatagtgtccctaatttaaaaa 16400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 2247885 - 2247844
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  2247885 attttataatgtccgtaatttaaaaatgaaaaatgaaccctc 2247844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 1968440 - 1968383
Alignment:
Q  17 aaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatccctt 74  Q
    ||||||||||||||||||||| |||||||| | |||||| | ||||||| | ||||||    
T  1968440 aaaagatatttcatagtgtccataatttaatattgaaaagtaaaccctcccctccctt 1968383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 53260755 - 53260714
Alignment:
Q  74 tcccttcccttcataaactctccatccaaacacacccttaat 115  Q
    ||||||||| || ||||| |||||||||||||||||||||||    
T  53260755 tcccttcccctcctaaaccctccatccaaacacacccttaat 53260714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 54935137 - 54935063
Alignment:
Q  37 cgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacacccttaat 115  Q
    ||||||||||||| ||||| | |||||||    ||| ||||||||| || ||||| ||| |||||||||||||||||||    
T  54935137 cgtaatttaaaaaagaaaagtaaaccctc----cccctcccttcccctcctaaaccctcaatccaaacacacccttaat 54935063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24565451 - 24565387
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||| |||||||||||||||   ||||| || | ||||||||||||||||||||| | |||||||    
T  24565451 aataagttaactttttaaaaagcatttcgtaatatccgtaatttaaaaatgaaaagtaaaccctc 24565387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 31348523 - 31348567
Alignment:
Q  69 tcccttcccttcccttcataaactctccatccaaacacaccctta 113  Q
    |||| ||||||||| || ||||||||| |||||||||||||||||    
T  31348523 tcccctcccttcccctcctaaactctcaatccaaacacaccctta 31348567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34110944 - 34111007
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||||||||||| | |||||| ||| | |||||||||||||| |||| | |||||||    
T  34110944 aatatgttaactttttaaaaaacatttcacagtat-cgtaatttaaaaataaaaagtaaaccctc 34111007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 56135818 - 56135747
Alignment:
Q  37 cgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccctta 113  Q
    |||||||||||||  |||||||||||||| | ||||||||| |||     ||||| ||| |||||||||||||||||    
T  56135818 cgtaatttaaaaaataaaaatgaaccctcccctcccttcccctcc-----taaaccctcaatccaaacacaccctta 56135747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8529938 - 8530045
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||  |||| ||||||||| |||     |||||||| |||||    
T  8529938 aatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaagtaaactttcacctcccttcccctcc-----taaactcttcatcc 8530032  T
Q  101 aaacacaccctta 113  Q
    ||||||| |||||    
T  8530033 aaacacatcctta 8530045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 38509996 - 38509894
Alignment:
Q  4 atgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaa 103  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||     |||  ||||||||| || ||||| ||| |||||||    
T  38509996 atgttaattttttaaaagacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccc-----tcctctcccttcccctcctaaaccctctatccaaa 38509902  T
Q  104 cacaccct 111  Q
    ||||||||    
T  38509901 cacaccct 38509894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 40095034 - 40094933
Alignment:
Q  5 tgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaac 104  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||||| | |||||||    ||||| ||||||| || ||||| ||||||||||||    
T  40095034 tgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctc----ccctt-ccttcccctcctaaaccctccatccaaac 40094940  T
Q  105 acaccct 111  Q
    |||||||    
T  40094939 acaccct 40094933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41498543 - 41498649
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||||||||| | || ||||    |||| || | ||| || ||||||||||||||    
T  41498543 aatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaatcctc----ccctcccttacccctcctaaactctccatcc 41498638  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  41498639 aaacacaccct 41498649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30010471 - 30010578
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||| ||||||| | ||||| ||||||||||||||| |||||||||| | ||||||| | |||||||||    |||| ||||| ||||||||    
T  30010471 aatatgttaactatttaaaaaacatttcgtagtgtccgtaatttcaaaatgaaaagtaaaccctcccctcccttccc----cttc-taaaccctccatcc 30010565  T
Q  101 aaacacaccctta 113  Q
    |||||||||||||    
T  30010566 aaacacaccctta 30010578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 12234149 - 12234252
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||| ||||||| ||||| | ||||| |||||||||||||||||||||||||| | |||||     |||| ||||||||| || ||||| ||||||||    
T  12234149 aatatgctaactttataaaaaacatttcgtagtgtccgtaatttaaaaatgaaaactaaaccc-----tcccctcccttcccctcctaaaccctccatcc 12234243  T
Q  101 aaacacacc 109  Q
    |||||||||    
T  12234244 aaacacacc 12234252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49946693 - 49946629
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||| |||||||    
T  49946693 aatatgttaacttttaaaaaaatattttatagtgtccgtaatttaaaaatgacaaataaaccctc 49946629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36285679 - 36285617
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccc 63  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||| |||||    
T  36285679 aatatgttaactttttaaaaaatattttatagtgttcgtaatttaaaaatgataaataaaccc 36285617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 7444634 - 7444741
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||||||   |||| |||||||||||||||| |||||||||| | ||||||| | || |||||||| |     |||||||| |||||    
T  7444634 aatatgttaactttttaaaaatcattttatagtgtccgtaattttaaaatgaaaactaaaccctcccctctcttccctttc-----taaactcttcatcc 7444728  T
Q  101 aaacacaccctta 113  Q
    |||||||| ||||    
T  7444729 aaacacactctta 7444741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32951423 - 32951369
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||| || | ||||||| ||||||||||||||||||||||||    
T  32951423 aatatgttaactttttataaaacatttcattgtgtccgtaatttaaaaatgaaaa 32951369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43552097 - 43552031
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcc 71  Q
    |||||||||||||||||||| | ||||||||     ||||||||||||||||||||| |||||||||||||    
T  43552097 aatatgttaactttttaaaaaacatttcataa----cgtaatttaaaaatgaaaaataaaccctcacatcc 43552031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 2859035 - 2858932
Alignment:
Q  3 tatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaa 102  Q
    |||||||||||||||||  | ||||||||| ||| |||||||| ||||||||| | ||||||| | |||||| || |||     ||||| ||||||||||    
T  2859035 tatgttaactttttaaataacatttcatagggtctgtaatttagaaatgaaaagtaaaccctcccctccctttccctcc-----taaaccctccatccaa 2858941  T
Q  103 acacaccct 111  Q
    |||||||||    
T  2858940 acacaccct 2858932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35349567 - 35349464
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||| || | ||||||  |||||||||||||||||||||||| | ||||||| |       ||| |||| || ||||| ||||||||    
T  35349567 aatatgttaactttttataaaacatttca--gtgtccgtaatttaaaaatgaaaagtaaaccctccc-------cccctcccctcttaaaccctccatcc 35349477  T
Q  101 aaacacaccctta 113  Q
    |||||||||||||    
T  35349476 aaacacaccctta 35349464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 40964737 - 40964844
Alignment:
Q  1 aatatgttaactttttaaaaga-tatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatc 99  Q
    ||||||||||||||| |||| | ||||| |  |||||||||||||||||||||||| | ||| ||| | ||  ||| |||| |||||||||| ||| |||    
T  40964737 aatatgttaacttttaaaaaaaatatttgacggtgtccgtaatttaaaaatgaaaagtaaactctcccttcttttctcttctcttcataaaccctctatc 40964836  T
Q  100 caaacaca 107  Q
    ||||||||    
T  40964837 caaacaca 40964844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26940948 - 26940874
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttc 75  Q
    |||| |||||||||| || | |||||||||||||||  |||||||||||| |||| ||||||||| |||| ||||    
T  26940948 aataagttaacttttaaacaaatatttcatagtgtctataatttaaaaataaaaagtgaaccctcccatctcttc 26940874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50744386 - 50744332
Alignment:
Q  1 aatatgttaactttttaaaagat-atttcatagtgtccgtaatttaaaaatgaaa 54  Q
    |||||||||||| ||||||| |  |||||||||||||||||||||||||||||||    
T  50744386 aatatgttaactctttaaaaaaacatttcatagtgtccgtaatttaaaaatgaaa 50744332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 26324087 - 26324013
Alignment:
Q  38 gtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccctt 112  Q
    |||||||||||| |||||   ||||||| | |||| ||||||||| || ||||| ||| ||||||||||||||||    
T  26324087 gtaatttaaaaaagaaaatcaaaccctcccctcccctcccttcccctcctaaaccctcaatccaaacacaccctt 26324013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 51597807 - 51597861
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||||||   |||||||||||| | |||||||||| ||||||    
T  51597807 aatatgttaactttttaaaaaccatttcatagtgttcataatttaaaattgaaaa 51597861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 20607419 - 20607464
Alignment:
Q  69 tcccttcccttcccttcataaactctccatccaaacacacccttaa 114  Q
    |||| ||||||||| || ||||| ||||||||||||||||||||||    
T  20607419 tcccctcccttcccctcctaaaccctccatccaaacacacccttaa 20607464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 41676443 - 41676484
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||| ||||||||||||||||||||||||||| | |||||||    
T  41676443 attttatagtgtccgtaatttaaaaatgaaaagtaaaccctc 41676484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6563715 - 6563779
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||| ||||||| |||||| ||| ||||||||||||   ||||||||||||||| | |||||||    
T  6563715 aatatattaacttcttaaaaaatagttcatagtgtcctcgatttaaaaatgaaaagtaaaccctc 6563779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9721243 - 9721134
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||| | ||||||||| |||     |||||  || ||||    
T  9721243 aatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaataaaccctcccctcccttcccctcc-----taaaccttcaatcc 9721149  T
Q  101 aaacacacccttaat 115  Q
    |||||||||||||||    
T  9721148 aaacacacccttaat 9721134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9719136 - 9719027
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| || ||     |||| ||||||||| || ||||| ||| ||||    
T  9719136 aatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaataaatcc-----tcccctcccttcccctcctaaaccctcaatcc 9719042  T
Q  101 aaacacacccttaat 115  Q
    |||||||| ||||||    
T  9719041 aaacacacgcttaat 9719027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30487410 - 30487302
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||| ||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||| | ||||||||| |||     ||||| ||||||||    
T  30487410 aatatgttgactttttaaaagacatttcatactgtcc-taatttaacaatgaaaagtgaaccctcccctcccttcccctcc-----taaaccctccatcc 30487317  T
Q  101 aaacacacccttaat 115  Q
    |||||||||||||||    
T  30487316 aaacacacccttaat 30487302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31849249 - 31849313
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  31849249 aatatgttaattttttaaaagacattttatagtgtccgtaatttaaaaatgaaaagtgaaccctc 31849313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1390458 - 1390512
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  1390458 aatatgttaactttttaaaaaatatttcatagtgtcagtaatttaaaaatgaaaa 1390512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 9298625 - 9298735
Alignment:
Q  2 atatgttaactttttaaaagat-atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||||||| |  |||||||| |||||||||||||||| |||||| | ||||||| | |||| ||||||||| || ||| | || |||||    
T  9298625 atatgttaactttttaaaaaaacatttcataatgtccgtaatttaaaattgaaaagtaaaccctcccctcccctcccttcccctcctaaccccttcatcc 9298724  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  9298725 aaacacaccct 9298735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10348903 - 10348850
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaa 54  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10348903 aatatgttaactttttaaaagatatttcatattatccgtaatttaaaaatgaaa 10348850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10818355 - 10818459
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||  |||||||| | |||||||||||||||||||||||||||||||| | |||||     |||| ||||| ||| || ||||||||| ||||    
T  10818355 aatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccc-----tcccctccctacccctcctaaactctcaatcc 10818449  T
Q  101 aaacacaccc 110  Q
    ||||||||||    
T  10818450 aaacacaccc 10818459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 34176474 - 34176576
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| | ||| ||||  || ||||||      |||||||| ||||||||    
T  34176474 aatatgttaactttaaaaaaaatatttcatagtgtccgtaatttaaaaatgaaaactaaactctcatctctcttccc------tcataaaccctccatcc 34176567  T
Q  101 aaacacacc 109  Q
    |||||||||    
T  34176568 aaacacacc 34176576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1300759 - 1300823
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||||| || |||||||||| ||||||||||||||||||||||| | |||||||    
T  1300759 aatatgttaactttttataaaatatttcatattgtccgtaatttaaaaatgaaaagtaaaccctc 1300823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 33236090 - 33236196
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| | | | |     |||| ||| ||||  |||||||||||||||||    
T  33236090 aatatgttaactttttaaaaaa-atttcatagtgtccgtaatttaaaaatgaaaagtaatctc-----tcccctcctttcctctcataaactctccatcc 33236183  T
Q  101 aaacacaccctta 113  Q
    ||| |||||||||    
T  33236184 aaatacaccctta 33236196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21606949 - 21606885
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||||| || | |||||||||| ||||||||||||||||||||| | |||||||    
T  21606949 aatatgttaactttttataaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctc 21606885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33041601 - 33041657
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaat 57  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||    
T  33041601 aatatgttaactttttaaaaaacatttcatagtatccgtaatttaaaaataaaaaat 33041657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4097617 - 4097563
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||| ||||    
T  4097617 aatatgttaactttttaaaaaacatttcaaagtgtccgtaatttaaaaattaaaa 4097563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 14515611 - 14515715
Alignment:
Q  2 atatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcca 101  Q
    ||||||||||| || |||| |||||| ||||||| | ||||||||||||||||  | |||||     |||||| ||||||| || ||||| |||||||||    
T  14515611 atatgttaactcttcaaaaaatattttatagtgttcataatttaaaaatgaaatctaaaccc-----tccctttccttcccctcctaaaccctccatcca 14515705  T
Q  102 aacacaccct 111  Q
    ||||||||||    
T  14515706 aacacaccct 14515715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 19278138 - 19278085
Alignment:
Q  2 atatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||| |||||||||||| |||||| |||||||| ||||||||||||||||||    
T  19278138 atatgtcaactttttaaaaaatattttatagtgtcagtaatttaaaaatgaaaa 19278085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5585407 - 5585352
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaa 56  Q
    ||||||||| |||||||||| | |||||||||||| ||||||||||||| ||||||    
T  5585407 aatatgttacctttttaaaaaacatttcatagtgttcgtaatttaaaaaagaaaaa 5585352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 665934 - 665881
Alignment:
Q  12 tttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||| |||||||| | | | |||||||||||||||||||||||||||    
T  665934 tttttaaaagacatttcataatattcataatttaaaaatgaaaaatgaaccctc 665881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 7776046 - 7775993
Alignment:
Q  7 ttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaa 60  Q
    |||||||||||||| |||||| ||||||| |||||||| |||||||||| ||||    
T  7776046 ttaactttttaaaaaatattttatagtgttcgtaattttaaaatgaaaagtgaa 7775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2900049 - 2900103
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||| ||| || | |||||||||||||  |||||||||||||||||    
T  2900049 aatatgttaacttcttataaaacatttcatagtgtctataatttaaaaatgaaaa 2900103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 1390353 - 1390316
Alignment:
Q  77 cttcccttcataaactctccatccaaacacacccttaa 114  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  1390353 cttcccctcataaaccctccatccaaacacacccttaa 1390316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39292 - 39186
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||    ||| ||  ||||| || ||||| ||||||||    
T  39292 aatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctc----cccctcatttcccctcctaaaccctccatcc 39197  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  39196 aaacacaccct 39186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 39362 - 39438
Alignment:
Q  34 gtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacacccttaat 115  Q
    |||||||||||||||| ||||| | |||||||    |||| || |||||||| ||||| ||| |||||||||||||||||||    
T  39362 gtccgtaatttaaaaaagaaaagtaaaccctc----ccctccctttcccttc-taaaccctcaatccaaacacacccttaat 39438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24560356 - 24560461
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||||||||| | ||| ||| ||||| ||||| |||     ||||| ||||||||    
T  24560356 aatatgttaactttttaaaaaacatttcatagtgtcggtaatttaaaaatgaaaagtaaactctcccatccgttcccctcc-----taaaccctccatcc 24560450  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  24560451 aaacacaccct 24560461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37102254 - 37102190
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||    
T  37102254 aatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactaaaccctc 37102190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41110426 - 41110350
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttccc 77  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||| || | |||||||||    
T  41110426 aatatgttaactttttataaaatatttcatagtgtccgtaatttaaaaatgaaaagtaaaccttctcctcccttccc 41110350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30200193 - 30200129
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||| |||||||||||| | |||||||||||||||||||||||||||||||| | |||||||    
T  30200193 aatatgtaaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaactaaaccctc 30200129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 220502 - 220448
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  220502 aatatgttaactttttaaaaaacatttcataatgtccgtaatttaaaaatgaaaa 220448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9312576 - 9312522
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||    
T  9312576 aatatgttaactttttacaaaatatttcatagtgtctgtaatttaaaaatgaaaa 9312522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 28581291 - 28581216
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcc 76  Q
    |||||||||||||||||||| |||||||| | | || |||||||||||||||||| | ||||||| | ||||||||    
T  28581291 aatatgttaactttttaaaaaatatttcacaatatctgtaatttaaaaatgaaaactaaaccctcccctcccttcc 28581216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 18654705 - 18654600
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||| || |||| |||||| |||| |||||||||||||||||||||  | ||||||| |||| ||| || |||     ||||| ||||||||    
T  18654705 aatatgttaactcttcaaaaaatattttatagggtccgtaatttaaaaatgaaatctaaaccctcccatctctttccctcc-----taaaccctccatcc 18654611  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  18654610 aaacacaccct 18654600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41040055 - 41040001
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||    
T  41040055 aatatgttaactttttataaaatatttcatagtgtctgtaatttaaaattgaaaa 41040001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46556284 - 46556338
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  46556284 aatatcttaactttttaaaaaatatgtcatagtgtccgtaattgaaaaatgaaaa 46556338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21773921 - 21773985
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||||||||||| | ||||| |||||| |||||||||||||| |||| | |||||||    
T  21773921 aatatgttaactttttaaaaaacatttcctagtgttcgtaatttaaaaataaaaagtaaaccctc 21773985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52474054 - 52474118
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||||| || |||||||||||  |||||||||||||||| |||| | |||||||    
T  52474054 aatatgttaactttttacaaaatatttcataggatccgtaatttaaaaataaaaagtaaaccctc 52474118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36569008 - 36568954
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||| ||| | |||||||||||| || ||||||||||||||||    
T  36569008 aatatgttaactttttgaaaaacatttcatagtgttcgaaatttaaaaatgaaaa 36568954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 16275810 - 16275702
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||| |||||||||||| || | |||||||| |||||| |||||||||||||| | ||||| |||    |||| || ||||||| ||||||  |||||||    
T  16275810 aataagttaactttttataaaacatttcataatgtccgaaatttaaaaatgaatagtgaactctc----ccctccctttccctt-ataaaccatccatcc 16275716  T
Q  101 aaacacacccttaa 114  Q
    ||||||||| ||||    
T  16275715 aaacacaccgttaa 16275702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25655075 - 25654999
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttccc 77  Q
    |||||||||||| || |||| | ||||| |||||| |||||| |||||||||||| | ||||||| | |||||||||    
T  25655075 aatatgttaactcttcaaaaaacatttcttagtgttcgtaatataaaaatgaaaagtaaaccctcccctcccttccc 25654999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10748395 - 10748345
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatg 51  Q
    |||||||||||||||||||| | |||| ||| || ||||||||||||||||    
T  10748395 aatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 10748345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37807219 - 37807273
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||| |||||||||||||| | ||||||||||||||  |||||||||| |||||    
T  37807219 aatatattaactttttaaaaaacatttcatagtgtccaaaatttaaaaacgaaaa 37807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 23028086 - 23028119
Alignment:
Q  22 atatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||||||||||||||| ||||    
T  23028086 atatttcatagtgtccgtaatttaaaaataaaaa 23028119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 34641152 - 34641236
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacaccctta 113  Q
    |||| ||| ||||||||||||||||| ||||| | | |||     |||| ||||||||| || ||||| |||||||||||||||||||||    
T  34641152 attttataatgtccgtaatttaaaaaagaaaagtaagccc-----tcccctcccttcccctcctaaaccctccatccaaacacaccctta 34641236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52185155 - 52185216
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||||||||| || ||||||  |||||||| |||||||||||| |||||| |||||||    
T  52185155 aatatgttaactttttataaaatattt--tagtgtccataatttaaaaat-aaaaataaaccctc 52185216  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27542036 - 27541960
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttccc 77  Q
    |||||||||  ||||||| |  ||||||||||||||  ||||||||||||||||  |||||| || | |||||||||    
T  27542036 aatatgttagatttttaacaagtatttcatagtgtctctaatttaaaaatgaaatgtgaaccatctcctcccttccc 27541960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 18231725 - 18231832
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||||||||||||| | ||||||||||||  |||||||||||||||||| | || ||     |||| ||||||||| || ||||| ||||||||    
T  18231725 aatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaatcc-----tcccctcccttcccctcctaaacgctccatcc 18231819  T
Q  101 aaacacaccctta 113  Q
    |||||||||||||    
T  18231820 aaacacaccctta 18231832  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33655213 - 33655149
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||    
T  33655213 aatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctc 33655149  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24970270 - 24970216
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  24970270 aatatgttaactttttaaaaaatatttcatagtatccgtaatttaaaaatgaaaa 24970216  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 47390995 - 47391104
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    ||||||||||| |||||||| || ||| |||||||||||||||||||||||||||   ||| |     |||| ||||||||| || ||||| ||||||||    
T  47390995 aatatgttaacattttaaaaaatgttttatagtgtccgtaatttaaaaatgaaaaccaaactc-----tcccctcccttcccctcttaaaccctccatcc 47391089  T
Q  101 aaacacacccttaat 115  Q
    |||||||||||||||    
T  47391090 aaacacacccttaat 47391104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 4833636 - 4833529
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||| |||||||||||| || | ||||||||||||| |||||||||||||||||| | |||||     |||| ||||||||| || ||||| ||||||||    
T  4833636 aataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaaccc-----tcccctcccttcccctcctaaaccctccatcc 4833542  T
Q  101 aaacacaccctta 113  Q
    ||||| |||||||    
T  4833541 aaacataccctta 4833529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34235112 - 34235058
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  34235112 aatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaa 34235058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42306469 - 42306523
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||    
T  42306469 aatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaa 42306523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 40196636 - 40196532
Alignment:
Q  2 atatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcca 101  Q
    |||||||||||||||| || | |||| ||||||||||||||| ||||||||||| | |||||||   ||||||||| ||||     |||| |||||||||    
T  40196636 atatgttaactttttataaaacattttatagtgtccgtaattcaaaaatgaaaagtaaaccctcctctcccttcccctccc-----aaaccctccatcca 40196542  T
Q  102 aacacaccct 111  Q
    ||||||||||    
T  40196541 aacacaccct 40196532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10315772 - 10315828
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaat 57  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||    
T  10315772 aatatgttaaatttttaaaaaacatttcatagtgtccgtattttaaaaatgaaaaat 10315828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41497062 - 41496957
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||||| ||||||||| | ||||| || |||||||||||||||||| |||| | ||      |||||| ||||||||| || ||||| ||||||||    
T  41497062 aatatgttaaatttttaaaaaacatttcctattgtccgtaatttaaaaataaaaagtaaa-----tcatcccctcccttcccctcctaaaccctccatcc 41496968  T
Q  101 aaacacaccct 111  Q
    |||||||||||    
T  41496967 aaacacaccct 41496957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1051604 - 1051552
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaa 54  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  1051604 aatatgttaactttttaaaaaacatttcat-gtgtccgtaatttaaaaatgaaa 1051552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13425225 - 13425117
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||| |||||| |||| ||||||  ||||||| ||||||||||||| |||||| |||     |||||  | ||||||| || ||||| ||| ||||    
T  13425225 aatatgttgacttttgaaaaaatattttgtagtgtctgtaatttaaaaataaaaaataaac-----catcctcttccttcccctcctaaaccctctatcc 13425131  T
Q  101 aaacacacccttaa 114  Q
    ||||||||||||||    
T  13425130 aaacacacccttaa 13425117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31553287 - 31553240
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaa 48  Q
    |||||||||||||||||||| | |||||||| ||||||| ||||||||    
T  31553287 aatatgttaactttttaaaaaacatttcataatgtccgttatttaaaa 31553240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13771051 - 13771004
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaat 50  Q
    ||||||||||||||||| ||  ||||| ||||||||||||||||||||||    
T  13771051 aatatgttaactttttataa--tattttatagtgtccgtaatttaaaaat 13771004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 30891078 - 30891045
Alignment:
Q  22 atatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||| |||||||||||||||||||||||||||    
T  30891078 atattttatagtgtccgtaatttaaaaatgaaaa 30891045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40572339 - 40572287
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaa 54  Q
    ||||||||||||||| |||| |||||| ||||  ||||||||||||||||||||    
T  40572339 aatatgttaacttttaaaaa-atattttatagcatccgtaatttaaaaatgaaa 40572287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22163214 - 22163167
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaa 49  Q
    ||||||||| |||| ||||| | ||||||||||||||||||||||||||    
T  22163214 aatatgtta-ctttctaaaaaacatttcatagtgtccgtaatttaaaaa 22163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22221922 - 22221875
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaa 49  Q
    ||||||||| |||| ||||| | ||||||||||||||||||||||||||    
T  22221922 aatatgtta-ctttctaaaaaacatttcatagtgtccgtaatttaaaaa 22221875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 39856037 - 39856112
Alignment:
Q  34 gtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacacccttaa 114  Q
    |||||||||||||||| ||||| | ||||||| | ||||||||| |||     ||||| ||| ||||||||||||||||||    
T  39856037 gtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcc-----taaaccctcaatccaaacacacccttaa 39856112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 48881602 - 48881558
Alignment:
Q  67 catcccttcccttcccttcataaactctccatccaaacacaccct 111  Q
    |||||| ||||||||| || ||||| |||||||||||||||||||    
T  48881602 catcccctcccttcccctcctaaaccctccatccaaacacaccct 48881558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16089 - 16145
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaat 57  Q
    |||||||||||||||||||| | |||||||| | |||||||||||||||||||||||    
T  16089 aatatgttaactttttaaaaaacatttcataatatccgtaatttaaaaatgaaaaat 16145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1311 - 1365
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    |||||||||||||||||||| | |||||||||||| | |||||||||||||||||    
T  1311 aatatgttaactttttaaaaaacatttcatagtgttcataatttaaaaatgaaaa 1365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15402 - 15504
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatcc 100  Q
    |||||||| || |||||||| | ||| ||||||||||||||||||||||| |||| |  | |||||      ||||||||||||| ||||| ||||||||    
T  15402 aatatgttgaccttttaaaaaacatt-catagtgtccgtaatttaaaaataaaaagtagatcctca-----tttcccttcccttcctaaaccctccatcc 15495  T
Q  101 aaacacacc 109  Q
    |||||||||    
T  15496 aaacacacc 15504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16401 - 16337
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||||||||| ||||| || | |||||||||||| | ||||||||||||||||| | |||||||    
T  16401 aatatgttaacgttttataaaacatttcatagtgttcataatttaaaaatgaaaagtaaaccctc 16337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6722 - 6776
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaa 55  Q
    ||||| |||| ||||| ||| |||||||||||||| ||||||||||||| |||||    
T  6722 aatattttaatttttttaaaaatatttcatagtgtgcgtaatttaaaaacgaaaa 6776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18908 - 18972
Alignment:
Q  1 aatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaatgaaaaatgaaccctc 65  Q
    ||||| ||||||| |||||| ||| ||||||||||||   ||||||||||||||| | |||||||    
T  18908 aatatattaacttcttaaaaaatagttcatagtgtcctcgatttaaaaatgaaaagtaaaccctc 18972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 3229 - 3150
Alignment:
Q  24 atttcatagtgtccgtaatttaaaaatgaaaaatgaaccctcacatcccttcccttcccttcataaactctccatccaaacacac 108  Q
    ||||||||||||| |||||||||||| ||||| | ||| |     |||| ||||||||| || ||||||||| ||||||||||||    
T  3229 atttcatagtgtctgtaatttaaaaaagaaaagtaaactc-----tcccctcccttcccctcctaaactctcaatccaaacacac 3150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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