View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_4 (Length: 639)
Name: NF15768_low_4
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 16217271 - 16216920
Alignment:
| Q |
1 |
tgagaagttttaattttataattaaataaattgataattttttgttgtttatactacttatagcagaaagaaattgaatcttagccaagagtcatttctt |
100 |
Q |
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| T |
16217271 |
tgagaagttttaattatataattaaataaattgataattttctgttgtttatactacttatagcagaaagaaattgaatcttagccaagagtcatttctt |
16217172 |
T |
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| Q |
101 |
aaaaagtccacatgtccaaggtccaaccaaactttagtgtgtattatctttaaataaattgttccctaacaacggtccaaagtatacagttatagatcaa |
200 |
Q |
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| T |
16217171 |
aaaaagtccacatgtccaaggtccaaccaaactttagtgtgtattatcttcaaataaattgttccctaacaacggtccaaa-tatacagttatagatcag |
16217073 |
T |
|
| Q |
201 |
cccttataaatctgttgcttatggacccaaaaaatcaaatttgtcgtttctataaatgcatattaatttgaatacatttatttttcttcaactgtgcaat |
300 |
Q |
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| T |
16217072 |
cccttataaatctgttgcttatggacccaaaaaatcaaatttctcgtttctataaatgcatattaatttgaatgcatttatttttcttcaactgtgcaat |
16216973 |
T |
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| Q |
301 |
atatagtgtaccttggcc-ttttgtgactcactcaccattcttaatttctctc |
352 |
Q |
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| T |
16216972 |
atatagtgtaccttggcctttttgtgactcactcaccattcttaatttctctc |
16216920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 379 - 621
Target Start/End: Complemental strand, 16216913 - 16216671
Alignment:
| Q |
379 |
tcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccatgtgcacaat |
478 |
Q |
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| T |
16216913 |
tcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaat |
16216814 |
T |
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| Q |
479 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaaaacaatctcacaaacttctg |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16216813 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaaaacaatctcacaaatttctg |
16216714 |
T |
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| Q |
579 |
taacat-tcttccatcaccttctttcaacattgtttgcacaaag |
621 |
Q |
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| T |
16216713 |
taacatctcttc-atcaccttctttcaacattgtctgcacaaag |
16216671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 379 - 621
Target Start/End: Complemental strand, 16964169 - 16963927
Alignment:
| Q |
379 |
tcagaaaatatgaagaatttcttggtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccatgtgcacaat |
478 |
Q |
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| T |
16964169 |
tcagaaaatatgaagaatttctttgtttctttatactttttgtttcctacaatctttacaattattcttgtgctacttactccaattccaagtgcacaat |
16964070 |
T |
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| Q |
479 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaaaacaatctcacaaacttctg |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16964069 |
taacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaacttcttcaaaacaatctcacaaatttctg |
16963970 |
T |
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| Q |
579 |
taacat-tcttccatcaccttctttcaacattgtttgcacaaag |
621 |
Q |
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| T |
16963969 |
taacatctcttc-atcaccttctttcaacattgtctgcacaaag |
16963927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 16964489 - 16964227
Alignment:
| Q |
17 |
tataattaaataaattgataattttttgttgtttatactacttatagcagaaagaaattgaatcttagccaagagtcatttcttaaaaagtccacatgtc |
116 |
Q |
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||||||||||||||| ||||| ||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| ||||||| |||| |
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| T |
16964489 |
tataattaaataaatcgataactttttgttgtttacactaaaaatag---aaagaaattgaatcttagccaaaagtcatttcttaagtagtccacctgtc |
16964393 |
T |
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| Q |
117 |
caaggtccaaccaaacttta-gtgtgtattatctttaaataaattgttccctaacaacggtccaaagtatacagttatagatcaacccttataaatctgt |
215 |
Q |
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|||| | ||||||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
16964392 |
caagattcaaccaaactttatgtacatattatcttcaaataagttgttccctaacaacggtccaaagtatacagttatagatcagtcctttaaaatctgt |
16964293 |
T |
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| Q |
216 |
tgcttatggacccaaaaaatcaaatttgtcgtttctataaatgcatattaatttgaatacatttat |
281 |
Q |
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| T |
16964292 |
tgcttatggacccaaaaaatcatatttgtcgtttctttaaatgcacattaatttgaatgcatttat |
16964227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 16964229 - 16964176
Alignment:
| Q |
300 |
tatatagtgtaccttggcctttt-gtgactcactcaccattcttaatttctctc |
352 |
Q |
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||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
16964229 |
tatatagtgtaccttagcctttttgaaactcactcaccattcttaatttctctc |
16964176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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