View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_5 (Length: 549)
Name: NF15768_low_5
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 22955351 - 22955870
Alignment:
| Q |
13 |
aggacatgcaggtaaatgagtaacacctctgttctcagttcccggtataagtatataatccggtatcgaaaattccttcaatgttcttatgcaatttcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22955351 |
aggacatgcaggtaaatgagtaacacctctgttctcagttcccggtataagtatataatccggtatcgaaaattccttcaatgttcttatgcaatttcca |
22955450 |
T |
|
| Q |
113 |
tcacccattgttcttatcttcaaattcaaactgcacaattttaattttaattatttcatcatcacaaaaacccttcatcatattcacaaattcaacnnnn |
212 |
Q |
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| T |
22955451 |
tcacccattgctcttatcttcaaattcaaactgcacaattttaattttaattatttcatcatcacaaaaacccttcatcatattcacaaattcaacaaaa |
22955550 |
T |
|
| Q |
213 |
nnnntaacaagattctaaatagctttcttaaaataaacaacgcgtaatggtaatggtttttccaccaaaacgaaaatttgttaagcgtgttgtgcttcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22955551 |
aaaataacaagattctaaatagctttcttaaaataaacaacgcgtaatggtaatggtttttccaccaaaacgaaaatttgttaagcgtgttgtgcttcat |
22955650 |
T |
|
| Q |
313 |
tggagtttgttgaacaacgaaaagaaacagaataaccagcatgaaaacagttacgtaaaaactaacaaaaatttggagattctcatcgttgttaacagaa |
412 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22955651 |
tggagtttgttgaagaacgaaaagaaacagaataaccagcatg-aaacagttacgtaataactaacaaaaatttggagattctcatcgttgttaacagaa |
22955749 |
T |
|
| Q |
413 |
tcagattcttcattnnnnnnnctcgtttatttgaaacttttttaatcaaaccaaacaggacttaatttcaaaagttcaaacaagaatcattcacaaagat |
512 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22955750 |
tcagattcttcattaaaaaaactcgttaatttgaaacttttttaatcaaaccaaacaggacttagtttcaaaagttcaaacaagaatcattcacaaagat |
22955849 |
T |
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| Q |
513 |
tattaaactaaaagcaaaaag |
533 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
22955850 |
tatcaaactaaaagcaaaaag |
22955870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 436 - 512
Target Start/End: Complemental strand, 11411580 - 11411505
Alignment:
| Q |
436 |
cgtttatttgaaacttttttaatcaaaccaaacaggacttaatttcaaaagttcaaacaagaatcattcacaaagat |
512 |
Q |
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| T |
11411580 |
cgtttatttggaactttttgaatgaa-ccaaacatgacttagtttcaaaagttcaaacaagaatcattcacaaagat |
11411505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 24731990 - 24732045
Alignment:
| Q |
290 |
ttgttaagcgtgttgtgcttcattggagtttgttgaacaacgaaaagaaacagaat |
345 |
Q |
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|||||| || |||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
24731990 |
ttgttacgcatgttgtgcttcattggagttcggggaacaacaaaaagaaacagaat |
24732045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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