View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_6 (Length: 546)
Name: NF15768_low_6
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 23 - 499
Target Start/End: Complemental strand, 6221145 - 6220673
Alignment:
| Q |
23 |
atttaggggaaaaagattccagtaatgcagcggtaaacgtgaggtaaataaagtctgataaaaagnnnnnnnatccaagaaacgaacttgagttcttccg |
122 |
Q |
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| T |
6221145 |
atttaggggaaaaagattccagtaaagcagcgctaagcgtgag-taaataaagtctgataaaaagttattttatccaagaaacgaactcgagttcttccg |
6221047 |
T |
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| Q |
123 |
aacaatttatttttaagtaaaactcattaaccacttgaacataattggtgtgcattaatctttgtgtgaatgttatgttaccttctcacaaccagaatca |
222 |
Q |
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| T |
6221046 |
aacaatttatttttaagtaaaactcattaatcacttgaacgtaattggtgtgcattaatctttgtgtgaatgttatgttaccttctcacaaccagaatca |
6220947 |
T |
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| Q |
223 |
tattaaagatgcatggaagactaatcatgtcttcattactagtatacctgactaattcaccattatttcattaggattaggataggattagaatacagta |
322 |
Q |
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| T |
6220946 |
tattaaagatgcatggaagtctaatcatgtcttcattactagtatacctgactaatttaccattatatcattaggattaggataggattagaatacagta |
6220847 |
T |
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| Q |
323 |
taggctggttcaccttaactttaactagagatactccaattttgtttaaaaagatcttgaccaattggaatggttatgcattcataaattttgattttgc |
422 |
Q |
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| T |
6220846 |
taggctggttcaccttaactttaactagagatactccaattttgtttaaaaagatcttgaccaattggaatagttatgcattcataaattttgattttgc |
6220747 |
T |
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| Q |
423 |
tcattttactcaatatatgtgatgtgagacttcattccaacaattgctaattgctatagcgagtgaacaacctacac |
499 |
Q |
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| T |
6220746 |
tcattttactcaatatatg---tgtgagacttcattccaacaattgctaattgctatagcgagtgaacaacctacac |
6220673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 6220629 - 6220583
Alignment:
| Q |
496 |
acactgtatcaatgttgttaaatggaacagagagaaataataagggt |
542 |
Q |
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| T |
6220629 |
acactgtatcaatgttgttaaatggaacagagagaaataataagggt |
6220583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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