View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15769_high_3 (Length: 432)
Name: NF15769_high_3
Description: NF15769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15769_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 52512264 - 52511842
Alignment:
| Q |
1 |
acatcatttgtgagtcctcttctcttttctcctcattctttttta-----------ataataatattcttcttccttattataatactacttttcattt- |
88 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
52512264 |
acatcatttgtgagtcctcttctcttttctcttcattctttgttataataataataataataataatattcttccttattataatactacttttcatttc |
52512165 |
T |
|
| Q |
89 |
---------aggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgt |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512164 |
atttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgt |
52512065 |
T |
|
| Q |
180 |
tatggtatcattcattcttctactttgctcatttcnnnnnnnncttagtaaacgactaaattgacagattttccgtaagtcgaggaaagcttgtctgccc |
279 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
52512064 |
tatggtatcattcattcttctaatttgctcatttcttttttt-cttagtaaacgactaaattgactgattttccgtaggtcgaggaaagcttgtctgccc |
52511966 |
T |
|
| Q |
280 |
tgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttcca |
379 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511965 |
tgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataagatgtataatggacgcctacttccc |
52511866 |
T |
|
| Q |
380 |
aattcttagaaggtatgtatacta |
403 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
52511865 |
aattcttagaaggtatgtatacta |
52511842 |
T |
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