View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15769_high_9 (Length: 334)
Name: NF15769_high_9
Description: NF15769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15769_high_9 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 43802099 - 43802426
Alignment:
| Q |
7 |
agaagcatagggatttcgtagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaa |
106 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802099 |
agaagcataaggacttcgtagacattctactctcactgatgcaccaaccgatcgatccctctgacgaaaaaacccatgtcgttgatcgaacaaacataaa |
43802198 |
T |
|
| Q |
107 |
ggctatatccctagacatgattgccggggcatttgaaacttccgtaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802199 |
ggctatatccctagacatgattgccggggcatttgaaacttccgcaacggttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaa |
43802298 |
T |
|
| Q |
207 |
aatctccaacaagagctagataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggaga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802299 |
aatctccaacaagagctagataacgtggttggggcgaacaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggaga |
43802398 |
T |
|
| Q |
307 |
ccttaagattataccctccgggaccact |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43802399 |
ccttaagattataccctccgggaccact |
43802426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 43812686 - 43812995
Alignment:
| Q |
25 |
tagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacat |
124 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||| |||||||||| ||| ||||||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
43812686 |
tagacattctactctcactgacgcaccagacgattgatccctctgacgaacaaagccatgtcattgatcgaacaaacataaaggctatagccttagacat |
43812785 |
T |
|
| Q |
125 |
gattgccggggcatttgaaacttccgtaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagcta |
224 |
Q |
| |
|
||| |||| ||||||||| ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43812786 |
gatcgccgcggcatttgacacttctgcaaccattgtggagtgggctttatccgagctcatgaggcatccaagagtaatgaaaaatctccaacaagagctg |
43812885 |
T |
|
| Q |
225 |
gataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctc |
324 |
Q |
| |
|
|||| || |||||| ||| |||||||| || || |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43812886 |
gatagtgtagttgggatgaacaaattagtggaggagaatgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctg |
43812985 |
T |
|
| Q |
325 |
cgggaccact |
334 |
Q |
| |
|
| |||||||| |
|
|
| T |
43812986 |
caggaccact |
43812995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 29944727 - 29944776
Alignment:
| Q |
162 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
211 |
Q |
| |
|
|||||||||||||| || || | |||||||||||||||||||||||||| |
|
|
| T |
29944727 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
29944776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University