View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15769_low_2 (Length: 277)

Name: NF15769_low_2
Description: NF15769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15769_low_2
NF15769_low_2
[»] chr7 (24 HSPs)
chr7 (15-277)||(21785235-21785499)
chr7 (22-277)||(21771802-21772054)
chr7 (22-277)||(21725737-21725989)
chr7 (81-277)||(21663995-21664191)
chr7 (81-277)||(21992070-21992266)
chr7 (62-277)||(21808220-21808435)
chr7 (81-277)||(21704543-21704736)
chr7 (59-277)||(21628003-21628218)
chr7 (138-277)||(21652023-21652162)
chr7 (138-277)||(21788183-21788322)
chr7 (37-277)||(21681494-21681743)
chr7 (161-277)||(21646720-21646836)
chr7 (138-277)||(21714137-21714276)
chr7 (25-277)||(15713456-15713716)
chr7 (166-277)||(21689395-21689506)
chr7 (26-122)||(21740951-21741047)
chr7 (184-277)||(21745532-21745625)
chr7 (15-90)||(21639539-21639614)
chr7 (49-128)||(21622896-21622974)
chr7 (233-277)||(21623242-21623286)
chr7 (62-277)||(21763946-21764155)
chr7 (80-277)||(21791898-21792104)
chr7 (80-128)||(21689288-21689336)
chr7 (26-88)||(21788089-21788151)
[»] scaffold0182 (3 HSPs)
scaffold0182 (22-122)||(34375-34475)
scaffold0182 (62-199)||(25191-25325)
scaffold0182 (244-277)||(25370-25403)
[»] chr1 (1 HSPs)
chr1 (213-277)||(18192288-18192352)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 21785235 - 21785499
Alignment:
Q  15 gagcccctctatatataatacgcattttgatttgtattttcatcaagtttgaaa--gatcaatatccttcaaccattatcatattgaatgaatgatggca 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||||||||||| ||||||| ||    
T  21785235 gagcccctctatatataatccgcattttgatttgtattttcatcaagtttgaaaaagatcaatatcccttaaccattatcatattgaatcaatgatgaca 21785334  T
Q  113 tccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaa 212  Q
    ||| ||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21785335 tcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaagggtgcaagagtatctaa 21785434  T
Q  213 gaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21785435 gaaataggaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 21785499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 21771802 - 21772054
Alignment:
Q  22 tctatatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaact 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  21771802 tctatatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccctcaaccattatcatattgaatgaatgatggcatccgaaact 21771901  T
Q  122 acccttgnnnnnnnnnttgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaa 221  Q
    |   ||          ||||||| ||| |||| |||||||||||||||||||||||| |||| |||||||||| ||||| | ||| ||| ||||||||||    
T  21771902 a---ttaaagaaaaatttgtggaactacaaaaatcaaagcaaataccccaaaattcaagaccgaagatacaaagggtgctaaagtctctcagaaatagaa 21771998  T
Q  222 aaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  21771999 aaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcat 21772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 21725737 - 21725989
Alignment:
Q  22 tctatatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaact 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  21725737 tctatatataatacgcattttgatttgtattttcatcaagtttgacagatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaact 21725836  T
Q  122 acccttgnnnnnnnnnttgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaa 221  Q
    |   ||          ||||||| ||| |||| |||||||||||| ||||||||||| |||| |||||||||| ||||| | ||| ||| ||||||||||    
T  21725837 a---ttaaagaaaaatttgtggaactacaaaaatcaaagcaaatatcccaaaattcaagaccgaagatacaaagggtgctaaagtctctcagaaatagaa 21725933  T
Q  222 aaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  21725934 aaaactttgagaagcattactcacccaagtgtgtgtcaataggtcctattcatcat 21725989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 21663995 - 21664191
Alignment:
Q  81 tcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagcaaataccccaaaattcacg 180  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||||| ||||||    
T  21663995 tcaaccattattatattgaaagaatgatggcatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaagttcacg 21664094  T
Q  181 accaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    |||||||||||||| ||||| | |  |||| ||||| |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  21664095 accaaagatacaaagggtgccacacaatctcagaaacagaaaaaactttgagaagtattactcacccaagttcctgtcaataggtcctatccatcat 21664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 21992070 - 21992266
Alignment:
Q  81 tcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagcaaataccccaaaattcacg 180  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  21992070 tcaaccattattatattgaatgaatgatggcatcccaaacttcccttgaagaaaaaattgtggagctagaaaattcaaagcaaataccccaaaattcacg 21992169  T
Q  181 accaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    | || ||||||||| ||||  ||||||||| | |||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  21992170 aacacagatacaaagggtggcagagtatctcaaaaatagaaaagactttgagaagcactactcacccaaattggtgtcaataggtcctatccatcat 21992266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 277
Target Start/End: Complemental strand, 21808435 - 21808220
Alignment:
Q  62 tttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagc 161  Q
    |||| ||||||||||| | ||| ||||||| |||||||||||||||||| |||| ||||||||||||         ||||||||||| |||||||||| |    
T  21808435 tttgcaagatcaatattcctcagccattattatattgaatgaatgatggaatcccaaactacccttgaaaaaaagattgtggagctaaaaaattcaaatc 21808336  T
Q  162 aaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaat 261  Q
    ||||||||||||||||||||||||||||||||| ||||   |||||||| |||||||||| |||  ||||||||||||||||||||||||| || |||||    
T  21808335 aaataccccaaaattcacgaccaaagatacaaagggtggctgagtatctcagaaatagaacaaatcttgagaagcattactcacccaagttggtatcaat 21808236  T
Q  262 aggtcctatccatcat 277  Q
    ||||||||||||||||    
T  21808235 aggtcctatccatcat 21808220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 21704543 - 21704736
Alignment:
Q  81 tcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagcaaataccccaaaattcacg 180  Q
    ||||||||||| ||||||||||||||||||||||| ||||||   ||          |||| ||| || ||||||||||||||| ||| | |||| ||||    
T  21704543 tcaaccattattatattgaatgaatgatggcatcccaaacta---ttaaagaaaaatttgtcgagttaaaaaattcaaagcaaacacctccaaatgcacg 21704639  T
Q  181 accaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  21704640 accaaagatacaaagggtgcaagagtatctcagaagtagaaaaaactttgagcagcattactcacccaagttagtgtcgataggtcctatccatcat 21704736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 59 - 277
Target Start/End: Original strand, 21628003 - 21628218
Alignment:
Q  59 aagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaa 158  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| ||||||   ||          |||||||| || |||||||||    
T  21628003 aagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaacta---ttaaagaaaaatttgtggagttaaaaaattcaa 21628099  T
Q  159 agcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtc 258  Q
    |||||| ||||| |||| |||||||||||||||||| ||||   ||  |||| ||||||| |||| | |||| |||| |||||||||||||||| |||||    
T  21628100 agcaaacaccccgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaataaaaaagattttgggaagtattactcacccaagtttgtgtc 21628199  T
Q  259 aataggtcctatccatcat 277  Q
    |||||||||||||||||||    
T  21628200 aataggtcctatccatcat 21628218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 277
Target Start/End: Original strand, 21652023 - 21652162
Alignment:
Q  138 ttgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagca 237  Q
    ||||||| ||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||| || |||||||| ||    
T  21652023 ttgtggaactacaaaaatcaaagcaaacaccccaaaattcacgaccaaagatacaaagggtgccacagtatctcagaaatagaaacaattttgagaaaca 21652122  T
Q  238 ttactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    |||| | |||||||| || |||||||||||||||||||||    
T  21652123 ttacacccccaagtttgtttcaataggtcctatccatcat 21652162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 277
Target Start/End: Original strand, 21788183 - 21788322
Alignment:
Q  138 ttgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagca 237  Q
    |||||||| || |||| |||||||||| |||||||||||||||||| || ||||||| ||||  ||||||||| ||||||||||||||||||||||||||    
T  21788183 ttgtggagttacaaaaatcaaagcaaacaccccaaaattcacgaccgaaaatacaaagggtggcagagtatctcagaaatagaaaaaactttgagaagca 21788282  T
Q  238 ttactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    |||||| ||||||||  ||||  |||||||||||||||||    
T  21788283 ttactcgcccaagttgttgtcggtaggtcctatccatcat 21788322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 21681494 - 21681743
Alignment:
Q  37 cattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnn 136  Q
    ||||||||||| || |||| | ||||||||||||||||||| | ||||||||||| | ||||||||||||||| ||||| ||||||||||||            
T  21681494 cattttgatttataatttcgttaagtttgaaagatcaatattcctcaaccattattacattgaatgaatgatgtcatcccaaactacccttgaagaaaat 21681593  T
Q  137 nttgtggagctagaaa---------attcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaact 227  Q
     ||||||||||| |||         || |||| |||| ||||||||||||||||||||||||||||| ||||| |  |||| | | |||||||| ||| |    
T  21681594 attgtggagctacaaatatacatagatacaaatcaaacaccccaaaattcacgaccaaagatacaaagggtgccacggtatgtcaaaaatagaacaaaat 21681693  T
Q  228 ttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    || || ||||||||   |||||||| ||||||||||||||||||||||||    
T  21681694 ttaaggagcattacagccccaagtttgtgtcaataggtcctatccatcat 21681743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 21646720 - 21646836
Alignment:
Q  161 caaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaa 260  Q
    |||| ||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||| |||||| |||||||| | |||||||| |||||||    
T  21646720 caaacaccccaaaattcacgaccaaagatacaaagggtgccacagtatctcagaaatagaacaaaatttgaggagcattacacccccaagttggtgtcaa 21646819  T
Q  261 taggtcctatccatcat 277  Q
    |||||||||||||||||    
T  21646820 taggtcctatccatcat 21646836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 277
Target Start/End: Original strand, 21714137 - 21714276
Alignment:
Q  138 ttgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagca 237  Q
    ||||||||||| |||| |||| ||||| |||||||||||||||||| |||||||||| ||||   ||   | | |||||||||| ||| |||||||||||    
T  21714137 ttgtggagctacaaaaatcaatgcaaacaccccaaaattcacgaccgaagatacaaagggtggttgaccgtttcagaaatagaacaaattttgagaagca 21714236  T
Q  238 ttactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  21714237 ttactcacccaagtttgtgtcattaggtcctatccatcat 21714276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 15713456 - 15713716
Alignment:
Q  25 atatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaactacc 124  Q
    ||||||||| ||||||||||||  || |||| | |  |||| ||||||||||||| |||||||| || ||| ||||||||||||||||||  ||||||||    
T  15713456 atatataatccgcattttgattcataatttcgtgac-tttgcaagatcaatatccctcaaccatgattataatgaatgaatgatggcatcgcaaactacc 15713554  T
Q  125 cttgnnnnnnnnnttgtggagctagaaaatt---------caaagcaaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaa 215  Q
    ||||         ||||||||||| ||| ||         ||||||||| |||||||| |||||||||||||||||||| ||||| ||  ||||| ||||    
T  15713555 cttgaaaaaaaaattgtggagctacaaagttacataaatacaaagcaaacaccccaaagttcacgaccaaagatacaaagggtgccaggctatctcagaa 15713654  T
Q  216 atagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    | || ||||| | ||||| ||||||| |||| ||||| || |||||||| ||||||||||||    
T  15713655 aaagtaaaaattatgagatgcattacgcacctaagttggtttcaataggccctatccatcat 15713716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 21689395 - 21689506
Alignment:
Q  166 accccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggt 265  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||  | || | |||  |||||| ||||    
T  21689395 acccgaaagttcacgaccaaagatacaaagggtgcaagagtatctcagaaatagagaaaaatttgagaagcattagaccccgaggttgatgtcaaaaggt 21689494  T
Q  266 cctatccatcat 277  Q
    ||||||||||||    
T  21689495 cctatccatcat 21689506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 21740951 - 21741047
Alignment:
Q  26 tatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaacta 122  Q
    ||||||| || |||||| |||| ||||||| | ||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||    
T  21740951 tatataacacacattttaatttatattttcgttaagtttgaaggatcaatattcctcaaccattattatattgaatgaatgatggcatcccaaacta 21741047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 21745532 - 21745625
Alignment:
Q  184 aaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||||||||| ||||  |||  |||| | |||||||| ||| |||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  21745532 aaagatacaaagggtggtagaccatctcataaatagaacaaattttgagaagcattactcacccaagttggtgtcattaggtcctatccatcat 21745625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 21639539 - 21639614
Alignment:
Q  15 gagcccctctatatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccatta 90  Q
    |||||| ||||||| |||||||||||||||||| | ||||| | ||||||||||||||||||||| ||||||||||    
T  21639539 gagcccatctatatgtaatacgcattttgatttatgttttcgttaagtttgaaagatcaatatccctcaaccatta 21639614  T

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Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 21622896 - 21622974
Alignment:
Q  49 tattttcatcaagtttgaaagatcaatat--ccttcaaccattatcatattgaatgaatgatggcatccaaaactacccttg 128  Q
    ||||||| | |||||||||||||||||||  || |||||||||||   ||||||||||||||||||||| ||||||||||||    
T  21622896 tattttcgttaagtttgaaagatcaatatatccctcaaccattat---attgaatgaatgatggcatcccaaactacccttg 21622974  T

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Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 21623242 - 21623286
Alignment:
Q  233 aagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  21623242 aagcattactcacccaagttggtgtcaataggtcctatccatcat 21623286  T

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Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 277
Target Start/End: Original strand, 21763946 - 21764155
Alignment:
Q  62 tttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagc 161  Q
    |||| ||||||||||||| ||||||||||   |||||||||||||||||||||| |||||   |||          ||||||||||| ||   |||||||    
T  21763946 tttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaact---cttaaagaaaaatttgtggagctacaa---tcaaagc 21764039  T
Q  162 aaataccccaaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaat 261  Q
    ||| |||||||||||||||||| |||||||||| ||||| | | || |  ||||  |    ||| || | |||||| ||| ||||||||||  |||||||    
T  21764040 aaacaccccaaaattcacgacccaagatacaaagggtgccatattaccgcagaaggatgtcaaatttggggaagcactacacacccaagttgttgtcaat 21764139  T
Q  262 aggtcctatccatcat 277  Q
    ||||||||||||||||    
T  21764140 aggtcctatccatcat 21764155  T

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Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 277
Target Start/End: Original strand, 21791898 - 21792104
Alignment:
Q  80 ttcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaa---------attcaaagcaaatacccc 170  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||         ||||||||||| |||         || |||| | || |||||    
T  21791898 ttcaaccattattatattgaatgaatgatggcatcccaacctacccttgaaagaaaagttgtggagctacaaaggtacatagatacaaatccaacacccc 21791997  T
Q  171 aaaattcacgaccaaagatacaaaaggtgcaagagtatctaagaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctat 270  Q
     || ||||  |||||||||||||| ||||  ||||||||| ||||| ||| |||| |||||||||||||||   || | ||| || ||||||||||| ||    
T  21791998 caagttcaaaaccaaagatacaaagggtggcagagtatctcagaaagagagaaaattttgagaagcattacatcccaaggtttgtatcaataggtcccat 21792097  T
Q  271 ccatcat 277  Q
    |||||||    
T  21792098 ccatcat 21792104  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 21689288 - 21689336
Alignment:
Q  80 ttcaaccattatcatattgaatgaatgatggcatccaaaactacccttg 128  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  21689288 ttcaaccattattatattgaatgaatgatggcatcccaacctacccttg 21689336  T

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Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 21788089 - 21788151
Alignment:
Q  26 tatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccat 88  Q
    |||||||||| |||||||||||  |||||| | ||||||||||||||||||||  ||||||||    
T  21788089 tatataatacacattttgatttacattttcgttaagtttgaaagatcaatatctctcaaccat 21788151  T

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Target: scaffold0182 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 34375 - 34475
Alignment:
Q  22 tctatatataatacgcattttgatttgtattttcatcaagtttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaact 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  34375 tctatatataatacgcattttgatttgtattttcatcaagtttgacagatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaact 34474  T
Q  122 a 122  Q
    |    
T  34475 a 34475  T

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Target: scaffold0182; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 25191 - 25325
Alignment:
Q  62 tttgaaagatcaatatccttcaaccattatcatattgaatgaatgatggcatccaaaactacccttgnnnnnnnnnttgtggagctagaaaattcaaagc 161  Q
    |||| ||||||||||||| ||||||||||   ||||||||||||||||||| || |||||   |||          ||| ||||||| |||| |||||||    
T  25191 tttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcagcccaaact---cttaaagaaaaaattgaggagctacaaaaatcaaagc 25287  T
Q  162 aaataccccaaaattcacgaccaaagatacaaaaggtg 199  Q
    ||| |||||||||||||| ||| |||||||||| ||||    
T  25288 aaacaccccaaaattcaccacccaagatacaaagggtg 25325  T

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Target: scaffold0182; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 25370 - 25403
Alignment:
Q  244 acccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||||||| ||||||||||||||||||||||||    
T  25370 acccaagttggtgtcaataggtcctatccatcat 25403  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 18192352 - 18192288
Alignment:
Q  213 gaaatagaaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcat 277  Q
    ||||| ||||| | ||||||||||||||||| ||||| || || ||||| |||||||||||||||    
T  18192352 gaaatcgaaaagattttgagaagcattactcgcccaaattggtatcaatgggtcctatccatcat 18192288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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