View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_59 (Length: 229)
Name: NF1576_high_59
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_59 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 29606447 - 29606663
Alignment:
| Q |
13 |
acctgtgaaaccaatagttccaaaaactacaactccaacatctgctcctttgaaaccaccagttccgaaagctcccgcaccaaaaccttctcctgtgaaa |
112 |
Q |
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| T |
29606447 |
acctgtgaaaccaatagttccaaaaactacaactccaacatctgctcctttgaaaccaccagttccgaaagctcccgcaccaaaaccttctcctgtgaaa |
29606546 |
T |
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| Q |
113 |
ccaccagttccaaaatcaaaacctccaacaactgctcctgtcaaatcaccagttccggatcctccaaaactcgctcctgtaaagttgccagtcccaaagg |
212 |
Q |
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| T |
29606547 |
ccaccagttccaaaatcaaaacctccaacaactgctcctgtcaaatcaccagttccggatcctccaaaactcgctcctgtaaagttgccagtcccaaagg |
29606646 |
T |
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| Q |
213 |
ttacaccggcattaagc |
229 |
Q |
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| T |
29606647 |
ttacaccggcattaagc |
29606663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 29606327 - 29606377
Alignment:
| Q |
28 |
agttccaaaaactacaactccaacatctgctcctttgaaaccaccagttcc |
78 |
Q |
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| T |
29606327 |
agttccaaaagctacgactccaacatctgctcctgtgaaaccgccagttcc |
29606377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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