View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_57 (Length: 238)
Name: NF1576_low_57
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_57 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 6273208 - 6272986
Alignment:
| Q |
16 |
caatgcagacttcggtatatttgtaatcatcggacattccctcatgtcgattttctctaaatttaccaacttaccaattgcatcagggaagcttgcaagg |
115 |
Q |
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| T |
6273208 |
caatgcagacttcggtatatttgtaatcatcggacattccctcatgtcgattttctctaaatttaccaacttaccaattgcatcagggaagcttgcaagg |
6273109 |
T |
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| Q |
116 |
taaacacattgagaaatgtcgatatacttcaatctagtcattccacagatgctaggaggaagtgttctcaaatttggacaagcatataaccgtagaatct |
215 |
Q |
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| T |
6273108 |
taaacacattgagaaatgtcgatatacttcaatctagtcattccacagatgctaggaggaagtgttctcaaatttggacaagcatataaccgtagaatct |
6273009 |
T |
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| Q |
216 |
ctagatatcttagtgagcctaat |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
6273008 |
ctagatatcttagtgagcctaat |
6272986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 6264453 - 6264333
Alignment:
| Q |
118 |
aacacattgagaaatgtcgatatacttcaatctagtcattccacagatgctaggaggaagtgttctcaaatttggacaagcatataaccgtagaatctct |
217 |
Q |
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||||||||| |||| ||||||||||||| || |||||| |||||| |||||||||||||||| | || ||||| || |||||||| || |||||| |
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| T |
6264453 |
aacacattgtgaaacatcgatatacttcagtcgagtcatgtcacagacgctaggaggaagtgtttttaataccggacacgcgtataaccggagtatctct |
6264354 |
T |
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| Q |
218 |
agatatcttagtgagcctaat |
238 |
Q |
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||| ||||||| | ||||||| |
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| T |
6264353 |
agagatcttagcgcgcctaat |
6264333 |
T |
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