View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15770_high_1 (Length: 498)

Name: NF15770_high_1
Description: NF15770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15770_high_1
NF15770_high_1
[»] chr1 (1 HSPs)
chr1 (1-473)||(52512169-52512657)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 52512169 - 52512657
Alignment:
Q  1 tgaaaagtagtattataataaggaagaagaatattattatta-----------aaaaagaatgaggagaaaagagaagaggactcacaaatgatgttacc 89  Q
    |||||||||||||||||||||||||||| | |||||||||||           | ||||||||| |||||||||||||||||||||||||||||||||||    
T  52512169 tgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaagagaagaggactcacaaatgatgttacc 52512268  T
Q  90 acttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaacacaaacatttaaga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512269 acttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaaaaatggagttgaacacaaacatttaaga 52512368  T
Q  190 cattgacgcctcgaaacaannnnnnnnnnnnnnnnnnnnnnnnnctatatgaatgcaattaattaagttaatgatgagtgagtgagt----aattgaaat 285  Q
    |||||||||||||||||||                         |||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  52512369 cattgacgcctcgaaacaacttcttcttcttcttcttcttcttcctatatgaatgcaattaattaagttaatgatgagtgagtgagtgagtaattgaaat 52512468  T
Q  286 tgaattgaaactcgtatataaacatacatacataccttggaggaagaatgatatccttgattt-gaggaagagtggatttagcaataaaacaacgcgtcc 384  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  52512469 tgaattgaaactcatatataaacatacatacataccttggaggaagaatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtcc 52512568  T
Q  385 ttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaattgcaatccattgagatatgaagaatagag 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512569 ttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaattgcaatccattgagatatgaagaatagag 52512657  T

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