View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15770_high_2 (Length: 493)
Name: NF15770_high_2
Description: NF15770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15770_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6486376 - 6486616
Alignment:
| Q |
1 |
attggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacattttatttagattt |
100 |
Q |
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| T |
6486376 |
attggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacattttatttagattt |
6486475 |
T |
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| Q |
101 |
ggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaatggttctgcagcgaactgcaccatgttcatgcaaa |
200 |
Q |
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| T |
6486476 |
ggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaacggttctgcagcgaactgcaccatgtacatgcaaa |
6486575 |
T |
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| Q |
201 |
gaatccaaatagctcgtctagtgagctaagggtcatcgaac |
241 |
Q |
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| T |
6486576 |
gaatccaaatagctcgtctagtgagctaagggtcatcgaac |
6486616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 302 - 485
Target Start/End: Original strand, 6486678 - 6486861
Alignment:
| Q |
302 |
ggagagaccttccagggtcgtagtagtaagggctcatgggggaggcggcgctgctgctacgcatggcatagtcatcgtcagtataggcttctgttgtgga |
401 |
Q |
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| T |
6486678 |
ggagagaccttccagggtcgtagtagtaagggctcatgggggaggcggcgctgctgctacgcatggcatagtcatcgtcagtataggcttctgttgtgga |
6486777 |
T |
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| Q |
402 |
aaatcggggttcggattgcataaactgtggacgaggaatgttattattgttgttgctgctgccattgctgctgctatctctgct |
485 |
Q |
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| T |
6486778 |
aaatcggggttcggattgcataaactgtggacgaggaatgttattgttgttgttgctgctgccattgctgctgctatttctgct |
6486861 |
T |
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