View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15770_low_1 (Length: 303)
Name: NF15770_low_1
Description: NF15770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15770_low_1 |
 | |
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| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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|
| [»] chr6 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38965910 - 38966212
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965910 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
38966009 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38966010 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
38966109 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38966110 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
38966209 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
38966210 |
ctt |
38966212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 35600616 - 35600314
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35600616 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
35600517 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35600516 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
35600417 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35600416 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
35600317 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
35600316 |
ctt |
35600314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 40656418 - 40656116
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40656418 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
40656319 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40656318 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
40656219 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40656218 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
40656119 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
40656118 |
ctt |
40656116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 37364071 - 37364373
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37364071 |
tccactctgctgcccaacaccttgctcattcctattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattcttgttgcttcctaacc |
37364170 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
37364171 |
acctcatggatcaggtcctgttgggtttgcatatgggaaacaagctgttcttgagtcaacctagtgatcatatcccgcattttgggagtgagctcaggtt |
37364270 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37364271 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
37364370 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
37364371 |
ctt |
37364373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 18334496 - 18334798
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18334496 |
tccactctgctgcccaacaccttgctcattcatattccagccttgatcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
18334595 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18334596 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
18334695 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18334696 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
18334795 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
18334796 |
ctt |
18334798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 38702814 - 38702990
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38702814 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
38702913 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccg |
177 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38702914 |
acctcatggatcaggtcctgctgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccg |
38702990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 4443586 - 4443888
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4443586 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
4443685 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4443686 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
4443785 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4443786 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaggtttcctgcaccgtacaatcgccc |
4443885 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
4443886 |
ctt |
4443888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 13512530 - 13512228
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13512530 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
13512431 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13512430 |
acctcatggatcaggtcctgctgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
13512331 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13512330 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaggtttcctgcaccgtacaatcgccc |
13512231 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
13512230 |
ctt |
13512228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 28694691 - 28694555
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28694691 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
28694592 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatggg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28694591 |
acctcatggatcaggtcctgttgggtttgcatatggg |
28694555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 33886998 - 33887300
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33886998 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
33887097 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33887098 |
acctcatggatcaggtcctgctgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
33887197 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33887198 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaggtttcctgcaccgtacaatcgccc |
33887297 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
33887298 |
ctt |
33887300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 41 - 303
Target Start/End: Original strand, 37567430 - 37567692
Alignment:
| Q |
41 |
ccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaaccacctcatggatcaggtcctgttgggtttgcatatgggcag |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37567430 |
ccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaaccacctcatggatcaggtcctgttgggtttgcatatgggcag |
37567529 |
T |
|
| Q |
141 |
caagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggttgccgagaagagccctccccagcattaagggtcaactttag |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37567530 |
caagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggttgccgagaagagccctccccagcattaagggtcaactttag |
37567629 |
T |
|
| Q |
241 |
agtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgcccctt |
303 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37567630 |
agtggtagcaacacccttgcggaagtttccagctaagtttcctgcaccgtacaatcgcccctt |
37567692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 33901542 - 33901844
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901542 |
tccactatgctgcccaccaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
33901641 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33901642 |
acctcatggatcagctcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccggatttctggagtgagctcaggtt |
33901741 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901742 |
gccgagaagaaccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
33901841 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
33901842 |
ctt |
33901844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 26249360 - 26249191
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26249360 |
tccactctgctgcccaacaccttgctcattcatattcaagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
26249261 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatca |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26249260 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatca |
26249191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 34676571 - 34676872
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676571 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaat-tgtccaactgagagtctaggaattctcgttgcttcctaacc |
34676669 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
34676670 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcatatcccgcatttcgggagtgagctcaggtt |
34676769 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34676770 |
gccgagaagagccctccccaacattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgccc |
34676869 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
34676870 |
ctt |
34676872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 9764381 - 9764086
Alignment:
| Q |
8 |
tgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaaccacctcat |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
9764381 |
tgctgcccaacaccttgctcattcctattccagccttgttcttgcctaaatgtgtccaactgagagtctaggaattcttgttgcttcctaaccaccttct |
9764282 |
T |
|
| Q |
108 |
ggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggttgccgaga |
207 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |
|
|
| T |
9764281 |
ggatcagctcttgttgggtttgcatttgggcagcaagctgttcttgagtcaacctagtgatcatatcccgcatttcgggagtgagctcaggttgccgaca |
9764182 |
T |
|
| Q |
208 |
agagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgcccctt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9764181 |
agagccctccccagcattaagggtcaactttagagtggtagcaacacccttgcggtagtttccagctaagtttcctgcaccgtacaatcgcccctt |
9764086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 255 - 1
Alignment:
| Q |
1 |
tccactctgctgcccaacaccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
255 |
tccactctgctgcctaataccttgctcattcatattccagccttgctcttgcctaaatgtgtccaactgagagtctaggaattctcgttgcttcctaacc |
156 |
T |
|
| Q |
101 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155 |
acctcatggatcaggtcctgttgggtttgcatatgggcagcaagctgttcttgagtcaacctagtgatcagatcccgcatttctggagtgagctcaggtt |
56 |
T |
|
| Q |
201 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55 |
gccgagaagagccctccccagcattaagggtcaactttagagtggtagcaacacc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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