View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15771_high_2 (Length: 278)
Name: NF15771_high_2
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 18443424 - 18443666
Alignment:
| Q |
13 |
aatatatcccataccaagtggttccattttgagtgaaccattggtataatggaaatttctttatttctttaacataattaattattcttctaatcatttt |
112 |
Q |
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| T |
18443424 |
aatatatcccataccaagtggttccattttgagtgaaccattggtataatggaaatttctttatttctttaaca----taattattcttctaatcatttt |
18443519 |
T |
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| Q |
113 |
cacttatttaggatgcaaattatgtgtttgatgaccatccttctaattttaaaagaaaatgatactctagtaatttgaatttcaactcaaagataagtaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||| |
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| T |
18443520 |
cacttatttaggatgcaaattatgtgtttgatgaccatccttctaatttt-aaagaaaatgatactctagtaatttaaatttcagctcaaaaataagtaa |
18443618 |
T |
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| Q |
213 |
aatctattaaatattgcaacttatagatcaaatctggatactcctgat |
260 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
18443619 |
aatctatcaaatattgcaacttatagatcaaatctggatactcttgat |
18443666 |
T |
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