View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15771_high_4 (Length: 244)
Name: NF15771_high_4
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2653182 - 2653409
Alignment:
| Q |
1 |
agtatcaacaatgcaatcactctcattagaaaccattgtaggaataacaggttcataataagagcaagaaccatatgattcatcaacaaatgtaaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2653182 |
agtatcaacaatgcaatcactctcattagaaaccattgtaggaagaacaggttcataataagaacaagaaccatatgattcatcaacaaatgtaaaacca |
2653281 |
T |
|
| Q |
101 |
tcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagattcttgagaataagatgaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2653282 |
tcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagattcttgagaataagatgaac |
2653381 |
T |
|
| Q |
201 |
taccattacaatcctcaacagaaacatt |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
2653382 |
taccattacaatcctcaacagacacatt |
2653409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University