View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15771_low_1 (Length: 639)
Name: NF15771_low_1
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 22 - 618
Target Start/End: Original strand, 24053885 - 24054483
Alignment:
| Q |
22 |
ctaaatgggattttacactaaaatgttatgcttttttaattctcaaattaagattagggattactttgtccacactttgaagttttccaagtattcacag |
121 |
Q |
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| T |
24053885 |
ctaaatgggattttacactaaaatgttatgcttttttaattctcaaattaagattggggatcactttgttcacgcttagaagttttccaagtattcacag |
24053984 |
T |
|
| Q |
122 |
tttcttataatgttatgtgacccttgcttgtggcattgctacccgataccgtctcaattgagtagtaccgttgaaaattgtagtcaaattgactaatacg |
221 |
Q |
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| T |
24053985 |
tttcttataatgttatgtgacccttg----tggcattgctacctgataccgtctcaattgagtagtaccgttgaaaattgtagtcaaattgactaatacg |
24054080 |
T |
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| Q |
222 |
tacgtacggtctcaattgtagtttcaacgacatcaaaaatggttgtcattctcgtatattaatcgcagattgtgaaacacatacactcttcgaattagac |
321 |
Q |
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| T |
24054081 |
tacgtacggtctcaattgtagtttcaacgacatcaaaaatggttgtcattcttgtatattaatcgcggattgtgaaacacatacactctttggattagac |
24054180 |
T |
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| Q |
322 |
gtgtcctaatataacacgtgctgtgttcaacactaacacgacactgacacacagttacacttaattgtgtgg--ttttttcaaaattattagtgatatcg |
419 |
Q |
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| T |
24054181 |
gtgtttcaatgtaatacgtgttgtgttcaacaccaacacgacactgacacatagttacacttaattgtatggttttttttttaaattattagtgatatcg |
24054280 |
T |
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| Q |
420 |
gtgtgtc----agtaagtatccgtatcatgtttggtgtctatgtccatatccatgtttcatagatcaattgatatacctttaactcatgataataaatca |
515 |
Q |
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| T |
24054281 |
gtgtgtcagtaagtaagtatccgtatcatattcagtgtatatgtccatatccatgtttcatagatcaattgatatacctttaactcatgataataaatca |
24054380 |
T |
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| Q |
516 |
cacctattatacctaattatttaaggacttcaannnnnnnagcaagaatccattttaatgctttaaagtgattgttacatgtttagtccataaacttcgt |
615 |
Q |
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| T |
24054381 |
cacctattatacctaattatttaaggacttcgatttttttagcaagaatccattttaatgctttaaagtgattgttacatgtttagtccataaacttcgt |
24054480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 34257980 - 34258025
Alignment:
| Q |
433 |
tatccgtatcatgtttggtgtctatgtccatatccatgtttcatag |
478 |
Q |
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| T |
34257980 |
tatccgtatcatgtccgatgtctatgtccatgtccatgtttcatag |
34258025 |
T |
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