View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15771_low_2 (Length: 447)

Name: NF15771_low_2
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15771_low_2
NF15771_low_2
[»] chr6 (5 HSPs)
chr6 (14-277)||(33690608-33690871)
chr6 (303-408)||(33691945-33692050)
chr6 (142-215)||(1115015-1115088)
chr6 (142-211)||(14521790-14521859)
chr6 (142-210)||(31936695-31936763)
[»] chr5 (9 HSPs)
chr5 (65-257)||(34842674-34842865)
chr5 (141-245)||(3651585-3651687)
chr5 (69-259)||(31336147-31336337)
chr5 (142-252)||(6741928-6742038)
chr5 (91-252)||(30899943-30900103)
chr5 (65-184)||(17464187-17464306)
chr5 (149-259)||(31304539-31304648)
chr5 (149-211)||(33030858-33030920)
chr5 (142-211)||(2630348-2630417)
[»] chr1 (9 HSPs)
chr1 (75-207)||(15864685-15864816)
chr1 (66-252)||(918315-918501)
chr1 (76-173)||(2210613-2210711)
chr1 (98-252)||(32736864-32737017)
chr1 (77-199)||(3019859-3019980)
chr1 (152-250)||(35109458-35109556)
chr1 (141-252)||(37918736-37918844)
chr1 (76-111)||(48382335-48382370)
chr1 (151-184)||(3019707-3019740)
[»] chr2 (7 HSPs)
chr2 (133-276)||(27139854-27139997)
chr2 (91-251)||(28770634-28770794)
chr2 (67-211)||(39533001-39533150)
chr2 (142-252)||(2869603-2869714)
chr2 (75-176)||(44732103-44732203)
chr2 (119-211)||(15903778-15903870)
chr2 (133-198)||(13414890-13414951)
[»] chr7 (8 HSPs)
chr7 (65-211)||(45685579-45685725)
chr7 (69-210)||(23580754-23580893)
chr7 (142-211)||(5817181-5817250)
chr7 (65-107)||(31150975-31151017)
chr7 (66-211)||(4162602-4162749)
chr7 (276-395)||(32057784-32057902)
chr7 (142-212)||(23402924-23402994)
chr7 (65-107)||(31169264-31169306)
[»] scaffold0016 (2 HSPs)
scaffold0016 (194-275)||(90323-90404)
scaffold0016 (173-252)||(102436-102515)
[»] chr4 (6 HSPs)
chr4 (134-211)||(18912266-18912343)
chr4 (93-248)||(34670527-34670682)
chr4 (160-275)||(42234298-42234412)
chr4 (149-200)||(39593855-39593906)
chr4 (66-107)||(9968583-9968624)
chr4 (142-207)||(18377481-18377545)
[»] chr8 (8 HSPs)
chr8 (66-184)||(14601307-14601425)
chr8 (142-252)||(9054748-9054858)
chr8 (141-263)||(34477132-34477251)
chr8 (100-197)||(6366636-6366733)
chr8 (162-276)||(33503772-33503887)
chr8 (151-252)||(37043648-37043750)
chr8 (226-275)||(28388037-28388086)
chr8 (156-252)||(11772017-11772112)
[»] chr3 (5 HSPs)
chr3 (162-258)||(41163166-41163263)
chr3 (65-200)||(37387546-37387679)
chr3 (94-183)||(44658345-44658435)
chr3 (69-180)||(34695397-34695507)
chr3 (146-211)||(25517099-25517164)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 33690608 - 33690871
Alignment:
Q  14 caaaggagagaacttttatagtaaaaaggtaaggattgagtgagagtgatccttgggttggaaaacacttcacaaataccttgggtagtgagatctcaat 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33690608 caaaggagagaacttttatagtaaaaaggtaagggttgagtgagagcaatccttaggttggaaaacacttcacaaataccttgggtagtgagatctcaat 33690707  T
Q  114 agagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttttt 213  Q
    ||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  33690708 agaaaaatgttaaaaattatttttttgttgttttttcttaggattcatcgtgggtttgagtgacttgaaaagtgtgtagaaattagagcttgttcttttt 33690807  T
Q  214 gaacttaggatataatttcttgtaacatctttgtatcacacattttatagtgaattgtagagcc 277  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33690808 gagcttaggatataatttcttgtaacatctttgtatcacacattttatagtgaattgtagagcc 33690871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 33691945 - 33692050
Alignment:
Q  303 atatttggttgtccatgaaacaattaacccttcttataatctcattccttgagttaagaggcacaatagcttcactatcataacttaacttgtaacaatt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||    
T  33691945 atatttggttgtccatgaaacaattaacccttcttataatctcattccttgagttaagaggcataatagcttcactatcatgacttaatttgtaaaaatt 33692044  T
Q  403 cctctc 408  Q
    ||||||    
T  33692045 cctctc 33692050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 1115015 - 1115088
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttga 215  Q
    |||||| |||||  |||||||||| || || |||||||||||| ||  |||||||||||||||||| |||||||    
T  1115015 tgttttctcttaatattcattgtgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttga 1115088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 14521859 - 14521790
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |||||| |||||||||| |||| | || || ||||| |||||| ||||||||||||||| | ||||||||    
T  14521859 tgttttctcttaggatttattgagagtgtgggtgacatgaaaaatgtgtagaaattaggttgtgttcttt 14521790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 31936763 - 31936695
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctt 210  Q
    |||||| ||||||||||||||| | || || ||||  |||||| || |||||||||||| |||||||||    
T  31936763 tgttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattaggatttgttctt 31936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 34842865 - 34842674
Alignment:
Q  65 cttgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgt 164  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||| ||| | || |||| |||   |||||||  ||| || |||||| |||||||||    
T  34842865 cttgggttggaaaacatttcacaaacaccttgggtagtgagatctcattaggggaaggttacaaa-gttttctttagtgtgttctcttagaattcattgt 34842767  T
Q  165 gggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcacacatt 257  Q
    |||||| ||||||||||||| || |||||||||||| | |||||||  ||| |||   | ||||  ||||||||| |||||||||||| ||||    
T  34842766 gggttttagtgacttgaaaaatgagtagaaattaggatatgttcttggtgagcttgtaagataacatcttgtaacctctttgtatcactcatt 34842674  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 3651687 - 3651585
Alignment:
Q  141 ttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaaca 240  Q
    ||||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||  || ||||||||||| |||    
T  3651687 ttgttttatcttaggattcattataggtttgagtgacttgaaaaatgggtagaaattagggtttgttctttgtgaacata--atctaatttcttgttaca 3651590  T
Q  241 tcttt 245  Q
     ||||    
T  3651589 ccttt 3651585  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 259
Target Start/End: Complemental strand, 31336337 - 31336147
Alignment:
Q  69 ggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaa-aaatcatttctttgttgttttttcttaggattcattgtggg 167  Q
    |||||| |||||||||||||| || |||| ||||||||||| || |||| |||| | | ||| | ||| ||| || |||| |||||||||| ||||||||    
T  31336337 ggttgggaaacacttcacaaacactttggatagtgagatcttaacagaggaatgatcagaaagcttttttttttttttttctcttaggatttattgtggg 31336238  T
Q  168 tttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcacacatttt 259  Q
    ||||||||||||||||| ||  || |||| ||| ||| |||||  |||  |  |||| |||||||||||||  |||||||||||| ||||||    
T  31336237 tttgagtgacttgaaaa-tggatataaataaggattttttcttagtgagatcgggatctaatttcttgtaagctctttgtatcactcatttt 31336147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 6742038 - 6741928
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacat 241  Q
    |||||||||||||||||||||| | || || |||||||||||| || |||||||||||| |||||||||| |||  ||   |  |||||||||||||| |    
T  6742038 tgttttttcttaggattcattgagagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagtttgcaagctaatttcttgtaactt 6741939  T
Q  242 ctttgtatcac 252  Q
    |||||||||||    
T  6741938 ctttgtatcac 6741928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 252
Target Start/End: Complemental strand, 30900103 - 30899943
Alignment:
Q  91 accttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgt 190  Q
    ||||||||||||||||| ||| ||||| || | ||||||   |||||||  |||||| ||| ||||||| ||||||||||||||| |||||||| |  ||    
T  30900103 accttgggtagtgagatttcattagaggaaggataaaaaagctttctttagtgttttctct-aggattctttgtgggtttgagtggcttgaaaaatcagt 30900005  T
Q  191 agaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcac 252  Q
    ||||| ||| ||||||||||| ||| |||      |||||||||||||| ||||||||||||    
T  30900004 agaaaatagagtttgttctttgtgagcttgtaggctaatttcttgtaacctctttgtatcac 30899943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 17464306 - 17464187
Alignment:
Q  65 cttgggttggaaaacacttcacaaataccttgggtagtgagatctcaataga-gaaatgttaaaaatcatttctttgttgttttttcttaggattcattg 163  Q
    |||||| ||| |||||||||||||| || || |||||| |||||||| |||| ||||  | ||||| | ||||||| ||||||| |||||  |||||||     
T  17464306 cttgggctgggaaacacttcacaaacacattcggtagtaagatctcattagatgaaagatcaaaaagc-tttctttattgttttgtcttaaaattcatta 17464208  T
Q  164 tgggtttgagtgacttgaaaa 184  Q
    |||||||||||||||||||||    
T  17464207 tgggtttgagtgacttgaaaa 17464187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 31304648 - 31304539
Alignment:
Q  149 tcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgta 248  Q
    |||||||||| ||||||||||||||||||||||||| ||  || |||| ||| ||| || ||  |||  |  ||||||||||||||||||  ||||||||    
T  31304648 tcttaggatttattgtgggtttgagtgacttgaaaa-tggatataaataaggattttttgttagtgagatcgggatataatttcttgtaagctctttgta 31304550  T
Q  249 tcacacatttt 259  Q
    |||| ||||||    
T  31304549 tcactcatttt 31304539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 33030858 - 33030920
Alignment:
Q  149 tcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    ||||||||||||||| | || ||||||||||||||| || |||||||||| | ||||||||||    
T  33030858 tcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttcttt 33030920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 2630417 - 2630348
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |||||| ||||||||||||||||| ||  | |||||||||||| ||| || |||||||| ||||||||||    
T  2630417 tgttttctcttaggattcattgtgagtgagggtgacttgaaaaatgtataaaaattaggttttgttcttt 2630348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 15864816 - 15864685
Alignment:
Q  75 aaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagt 174  Q
    |||||| |||| ||| | ||||||||||||||||||| |||||||||| | |||||  ||||| | ||||||||||||||||||||||||||||||||||    
T  15864816 aaaacaattcataaacatcttgggtagtgagatctcattagagaaatgatcaaaatgctttctctattgttttttcttaggattcattgtgggtttgagt 15864717  T
Q  175 gacttgaaaagtgtgtagaaattagggtttgtt 207  Q
    || ||||||| || ||||| |||| | ||||||    
T  15864716 ga-ttgaaaaatgggtagacattatgatttgtt 15864685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 66 - 252
Target Start/End: Original strand, 918315 - 918501
Alignment:
Q  66 ttgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtg 165  Q
    ||||||| | |||| ||| ||||| | ||||||||||||||||||| ||||| ||   | |||| | || | || ||||||| |||||||||||||||||    
T  918315 ttgggtttggaaaccctttacaaacatcttgggtagtgagatctcattagaggaagcatcaaaagc-ttccattattgttttctcttaggattcattgtg 918413  T
Q  166 ggtttgagt-gacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcac 252  Q
    ||||||||| || ||||||| || |||||||||| |||||||||||| |||  ||   | |||||||||||||| |||||||||||||    
T  918414 ggtttgagtggaattgaaaaatgggtagaaattatggtttgttctttgtgagtttgtaagataatttcttgtaatatctttgtatcac 918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 2210711 - 2210613
Alignment:
Q  76 aaacacttcacaaataccttgggtagtgagatctcaatagagaaatg-ttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgag 173  Q
    ||||| |||||||  ||||||||||||||||||||| |||||||||| | ||||||  ||||||| ||||||| |||||| ||||||| ||||||||||    
T  2210711 aaacagttcacaatcaccttgggtagtgagatctcattagagaaatgatcaaaaatgttttctttattgttttctcttagaattcattttgggtttgag 2210613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 32736864 - 32737017
Alignment:
Q  98 gtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaatt 197  Q
    |||||||||||||| ||||| |||| | ||| || || ||||   ||||| ||||||||||||||||| || |   ||||||||||| || |||||||||    
T  32736864 gtagtgagatctcattagaggaatgatcaaa-tccttcctttagggttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggtagaaatt 32736962  T
Q  198 agggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcac 252  Q
    |||||||||||||| |||||||   |  |||||| ||||||| ||||||||||||    
T  32736963 agggtttgttctttatgaacttttaagctaattttttgtaacctctttgtatcac 32737017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 3019980 - 3019859
Alignment:
Q  77 aacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtga 176  Q
    ||||||||||||| |||||| ||||||| |||||| ||  ||||| |  |||| | ||||||| ||||||| | | |||||||||| |||||||||||||    
T  3019980 aacacttcacaaacaccttgagtagtgatatctcattattgaaatatcgaaaaac-tttctttattgttttctatcaggattcattttgggtttgagtga 3019882  T
Q  177 cttgaaaagtgtgtagaaattag 199  Q
    |||||||| |  |||||||||||    
T  3019881 cttgaaaaattggtagaaattag 3019859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 35109458 - 35109556
Alignment:
Q  152 taggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatc 250  Q
    |||||||||||||| || || |||||||||||| || |||||||||| |||||||||||| ||| |||   |  |||||||||||||| | ||||||||    
T  35109458 taggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgtgagcttttaagctaatttcttgtaacctatttgtatc 35109556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 37918844 - 37918736
Alignment:
Q  141 ttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaaca 240  Q
    ||||||| |||||||||||||||||| ||  || |||||||||| |  |||||| ||||||   ||||||| ||| |||   || |||||||||||||||    
T  37918844 ttgttttctcttaggattcattgtggattgaagcgacttgaaaaataggtagaatttaggg---gttctttatgagcttgaaatctaatttcttgtaaca 37918748  T
Q  241 tctttgtatcac 252  Q
    ||||||||||||    
T  37918747 tctttgtatcac 37918736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 48382335 - 48382370
Alignment:
Q  76 aaacacttcacaaataccttgggtagtgagatctca 111  Q
    |||||||||||||| |||||||||||||||||||||    
T  48382335 aaacacttcacaaacaccttgggtagtgagatctca 48382370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 3019740 - 3019707
Alignment:
Q  151 ttaggattcattgtgggtttgagtgacttgaaaa 184  Q
    ||||||||||||||||||||||||||||| ||||    
T  3019740 ttaggattcattgtgggtttgagtgacttcaaaa 3019707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 276
Target Start/End: Complemental strand, 27139997 - 27139854
Alignment:
Q  133 tttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttc 232  Q
    ||||||| ||||||| | |||||||||||| ||||||  ||||||||||||  ||||||||||||||||||||| |||| ||| |||   || |||||||    
T  27139997 tttctttattgttttctattaggattcattttgggttcaagtgacttgaaatatgtgtagaaattagggtttgtactttgtgagctttaaatttaatttc 27139898  T
Q  233 ttgtaacatctttgtatcacacattttatagtgaattgtagagc 276  Q
     |||||||| ||||||||||   ||| ||||||||||| |||||    
T  27139897 ctgtaacatttttgtatcactattttcatagtgaattggagagc 27139854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 28770634 - 28770794
Alignment:
Q  91 accttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgt 190  Q
    ||||||||||||||||||||| |||   || | ||||||   || ||||  |||||| ||||||||||||||| | || ||  ||||||||||| || ||    
T  28770634 accttgggtagtgagatctcattagctgaaggataaaaaagtttcctttagtgttttctcttaggattcattgcgagtgtgtatgacttgaaaaatgggt 28770733  T
Q  191 agaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatca 251  Q
    ||||||||| ||||||||||| ||| |||   |  ||||||||||||| ||||||||||||    
T  28770734 agaaattagagtttgttctttgtgagcttttaagctaatttcttgtaatatctttgtatca 28770794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 39533150 - 39533001
Alignment:
Q  67 tgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaa-----tcatttctttgttgttttttcttaggattcat 161  Q
    |||||||| |||||||||||||| || |||||||||||||||||| || ||||||| | ||||     |  ||| ||| ||||||| ||||  |||||||    
T  39533150 tgggttgggaaacacttcacaaacacattgggtagtgagatctcattacagaaatgatcaaaatgtttttttttttttattgttttctcttgagattcat 39533051  T
Q  162 tgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    ||| |  ||| ||||||| || | ||||||||||||||| | ||||||||    
T  39533050 tgtagacttgtgtgacttaaagaatgtgtagaaattaggatatgttcttt 39533001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 2869603 - 2869714
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagg-gtttgttctttttgaacttaggatataatttcttgtaaca 240  Q
    |||||| ||||||||||||||| | || || |||||||||||| || ||||||||||||  |||||||||| ||| |||   |  ||||||||||||||     
T  2869603 tgttttctcttaggattcattgagagtgtgggtgacttgaaaaatgggtagaaattaggtttttgttctttgtgagcttttaagctaatttcttgtaact 2869702  T
Q  241 tctttgtatcac 252  Q
     |||||||||||    
T  2869703 cctttgtatcac 2869714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 44732203 - 44732103
Alignment:
Q  75 aaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagt 174  Q
    ||||||||||||||| ||||| | |||||  || ||| ||||  || | |||||| | ||||| | ||||||| ||||||||||||||||||||||||||    
T  44732203 aaaacacttcacaaacaccttagatagtggaatttcattagaagaaagataaaaaac-tttctctcttgttttctcttaggattcattgtgggtttgagt 44732105  T
Q  175 ga 176  Q
    ||    
T  44732104 ga 44732103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 15903778 - 15903870
Alignment:
Q  119 aatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |||| ||||||  ||||||||  |||||| || |||||||||||| | || || |||||||||||| || |||||||||||  ||||||||||    
T  15903778 aatgataaaaaagatttcttttgtgttttctcataggattcattgagagtgtgggtgacttgaaaaatgggtagaaattagaatttgttcttt 15903870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 13414890 - 13414951
Alignment:
Q  133 tttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaatta 198  Q
    ||||||| |||||||||||    |||| |||||||||||||||||||||||| |  ||||||||||    
T  13414890 tttctttcttgttttttct----attccttgtgggtttgagtgacttgaaaaattagtagaaatta 13414951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 45685579 - 45685725
Alignment:
Q  65 cttgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgt 164  Q
    |||||||||  ||||| |||||||| ||||| | |||| ||||||||  | ||||| | ||||||   ||||||| ||||||| |||||||||||||||     
T  45685579 cttgggttgtgaaacaattcacaaacacctttgatagtcagatctcatcaaagaaaggataaaaaaactttctttcttgttttctcttaggattcattgc 45685678  T
Q  165 gggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |  |||||||||||| |||| ||  ||||||||| ||||||||||||    
T  45685679 gactttgagtgacttaaaaaatggatagaaattaaggtttgttcttt 45685725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 23580754 - 23580893
Alignment:
Q  69 ggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggt 168  Q
    ||||||||||||||| ||||  |||||||||||| | ||||   |  ||||| | ||||||  |||||||| ||||||| ||||| ||| ||||||||||    
T  23580754 ggttggaaaacactttacaagcaccttgggtagtaaaatctagttttagaaaggataaaaaa-atttctttattgttttctcttatgatccattgtgggt 23580852  T
Q  169 ttgagtgacttgaaaagtgtgtagaaattagggtttgttctt 210  Q
    |||||||||||||||| ||  ||||||||| |||||||||||    
T  23580853 ttgagtgacttgaaaa-tggatagaaattaaggtttgttctt 23580893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 5817181 - 5817250
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||  ||||||||||| ||||||||||    
T  5817181 tgttttttcttaggattcattgagagtgtgagtgacttgaaaaatggatagaaattaggttttgttcttt 5817250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 31150975 - 31151017
Alignment:
Q  65 cttgggttggaaaacacttcacaaataccttgggtagtgagat 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  31150975 cttgggttgggaaacacttcacaaataccttgggtagtgagat 31151017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 4162602 - 4162749
Alignment:
Q  66 ttgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttct--taggattcattg 163  Q
    ||||||||  ||| |||||||||||| |||||||||||| |||||| | |||||| | | ||||   |||||||  | | ||||||  || ||||||||     
T  4162602 ttgggttgataaatacttcacaaatatcttgggtagtgatatctcatttgagaaaggatgaaaaagctttctttaatatgttttctgttatgattcatta 4162701  T
Q  164 tgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    ||||||||| ||||||||||| |  |||||||||| | ||||||||||    
T  4162702 tgggtttgaatgacttgaaaaataagtagaaattatgatttgttcttt 4162749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 32057784 - 32057902
Alignment:
Q  276 cctactactagtaatcagaagatgattatatttggttgtccatgaaacaattaacccttcttataatctcattccttgagttaagaggcacaatagcttc 375  Q
    ||||||| ||| ||||||  ||||| |||||| | | ||||||  |||||||||||||  || ||||||| |||| ||||||||||| ||   ||||||     
T  32057784 cctactattagcaatcaggggatgaatatatt-gatagtccatctaacaattaaccctcgttgtaatctccttccatgagttaagagacatcgtagcttt 32057882  T
Q  376 actatcataacttaacttgt 395  Q
    |||||||||||| |||||||    
T  32057883 actatcataactcaacttgt 32057902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 23402924 - 23402994
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttt 212  Q
    |||||| ||||||||||||||| | || |||||||  |||||| || ||||||||||||  ||||||||||    
T  23402924 tgttttctcttaggattcattgagagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttctttt 23402994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 31169264 - 31169306
Alignment:
Q  65 cttgggttggaaaacacttcacaaataccttgggtagtgagat 107  Q
    |||||||||| |||||||||||||| ||||||| |||||||||    
T  31169264 cttgggttgggaaacacttcacaaacaccttggatagtgagat 31169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 90404 - 90323
Alignment:
Q  194 aattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcacacattttatagtgaattgtagag 275  Q
    ||||||||||||||||||||||| || |||| |||||||||| ||| |||||||| ||||||||||| |||| |||| ||||    
T  90404 aattagggtttgttctttttgaatttgggatctaatttcttgaaacttctttgtaccacacattttacagtggattggagag 90323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 102436 - 102515
Alignment:
Q  173 gtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcac 252  Q
    |||||||||||| || ||||||||||||||||||| ||| ||| |||   | ||||||||||||||| ||||||||||||    
T  102436 gtgacttgaaaaatgggtagaaattagggtttgttttttgtgagcttttaagataatttcttgtaacctctttgtatcac 102515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 18912266 - 18912343
Alignment:
Q  134 ttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||||| ||  || || ||||||||||||||||    
T  18912266 ttctttattattttctcttaggattcattgtgggtttgagtgacttgaaaaatggatataatttagggtttgttcttt 18912343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 34670527 - 34670682
Alignment:
Q  93 cttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtag 192  Q
    ||||||||||||||||||| ||||| || | |  |||   |||||||  |||||| ||||||||||||||||| || ||||||||||||||| ||  |||    
T  34670527 cttgggtagtgagatctcattagaggaaggatctaaaagttttctttagtgttttctcttaggattcattgtgagtgtgagtgacttgaaaaatggatag 34670626  T
Q  193 aaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgta 248  Q
    |||||| | |||||||||| ||| ||    |  |||||||||||||| ||||||||    
T  34670627 aaattatgatttgttctttgtgagctattaagctaatttcttgtaacctctttgta 34670682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 42234298 - 42234412
Alignment:
Q  160 attgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcacacatttt 259  Q
    |||||||| |||||| |||| |||| || ||||||||||| ||| ||||||| |||||||  ||| |||||||||||||| ||||| ||||||  |||||    
T  42234298 attgtgggattgagtaacttaaaaaatgagtagaaattagagtt-gttctttgtgaacttgagatctaatttcttgtaacctctttatatcacttatttt 42234396  T
Q  260 atagtgaattgtagag 275  Q
     ||||| |||| ||||    
T  42234397 ttagtggattggagag 42234412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 39593906 - 39593855
Alignment:
Q  149 tcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagg 200  Q
    ||||||||||||||||||||||||||||||||| ||  | ||||||||||||    
T  39593906 tcttaggattcattgtgggtttgagtgacttgacaaaggggtagaaattagg 39593855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 9968624 - 9968583
Alignment:
Q  66 ttgggttggaaaacacttcacaaataccttgggtagtgagat 107  Q
    ||||||||| |||||||||||||| |||||| ||||||||||    
T  9968624 ttgggttggtaaacacttcacaaacaccttgtgtagtgagat 9968583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 18377545 - 18377481
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgtt 207  Q
    |||||||||||||||||||||||  || || ||||| |||||| || ||||||||||||| |||||    
T  18377545 tgttttttcttaggattcattgtaagtgtgggtgacatgaaaa-tgggtagaaattagggcttgtt 18377481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 14601425 - 14601307
Alignment:
Q  66 ttgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtg 165  Q
    |||||||||||||||||||| ||| || |||| || |||||||| | |||||||||  |  |||   ||||||| ||||||| || |||||||||| |||    
T  14601425 ttgggttggaaaacacttcataaacacattggctaatgagatcttattagagaaataatctaaaagctttctttattgttttctcataggattcatcgtg 14601326  T
Q  166 ggtttgagtgacttgaaaa 184  Q
     ||||||||||||||||||    
T  14601325 cgtttgagtgacttgaaaa 14601307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 9054748 - 9054858
Alignment:
Q  142 tgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacat 241  Q
    |||||| ||||||||||||||| | || ||||||||||||||| || |||||||||||  |||||||||| ||  |||   |  ||||||||||||||      
T  9054748 tgttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattagattttgttctttgtgcgcttttaagctaatttcttgtaacca 9054847  T
Q  242 ctttgtatcac 252  Q
    |||||||||||    
T  9054848 ctttgtatcac 9054858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 34477132 - 34477251
Alignment:
Q  141 ttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaaca 240  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||| || || ||||||||   ||||||||| |||  ||   |  ||||||||| ||||     
T  34477132 ttgttttctctttggattcattgtggatttgagtgacttgaaaaatgggtcgaaattag---ttgttctttgtgagtttgtaagttaatttcttttaacc 34477228  T
Q  241 tctttgtatcacacattttatag 263  Q
    |||||||||||| ||||| ||||    
T  34477229 tctttgtatcactcatttcatag 34477251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 6366733 - 6366636
Alignment:
Q  100 agtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaatt 197  Q
    |||||||||||| |||| ||| | | ||||   ||| ||| ||||||| ||||||||||||||||  |||||||||| ||||||||||  ||||||||    
T  6366733 agtgagatctcattagaaaaaggatcaaaacgttttttttattgttttctcttaggattcattgttagtttgagtgaattgaaaagtggatagaaatt 6366636  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 33503772 - 33503887
Alignment:
Q  162 tgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatcttt-gtatcacacatttta 260  Q
    ||||||||||||||||||||||| || ||||||||||||  |||| ||||  |  |||  ||  ||||||||| |||| ||||| ||||||| ||||| |    
T  33503772 tgtgggtttgagtgacttgaaaaatgggtagaaattaggtattgtgctttgagggcttgtgagctaatttcttttaacctctttggtatcactcatttca 33503871  T
Q  261 tagtgaattgtagagc 276  Q
    ||||| |||| |||||    
T  33503872 tagtggattgaagagc 33503887  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 37043750 - 37043648
Alignment:
Q  151 ttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaatta---gggtttgttctttttgaacttaggatataatttcttgtaacatctttgt 247  Q
    |||| |||||||| |||||||||||||||||||| || ||| ||||||   ||||||||||||| ||| |||  ||| |||||||||| ||| | |||||    
T  37043750 ttagtattcattgcgggtttgagtgacttgaaaaatgggta-aaattaactgggtttgttctttgtgagcttgagatctaatttcttgcaacct-tttgt 37043653  T
Q  248 atcac 252  Q
    |||||    
T  37043652 atcac 37043648  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 28388086 - 28388037
Alignment:
Q  226 taatttcttgtaacatctttgtatcacacattttatagtgaattgtagag 275  Q
    |||||||||||||| |||||||||||  |||||||||||| |||| ||||    
T  28388086 taatttcttgtaacctctttgtatcaatcattttatagtggattggagag 28388037  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 11772112 - 11772017
Alignment:
Q  156 attcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaacttaggatataatttcttgtaacatctttgtatcac 252  Q
    |||||||| ||||||||||||||||||||  | ||| | |||||| | |||||||| |||||||   |  ||||||||| |||| ||||||||||||    
T  11772112 attcattgggggtttgagtgacttgaaaaaagggta-atattaggatatgttctttgtgaacttgtaaactaatttcttttaacctctttgtatcac 11772017  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 41163166 - 41163263
Alignment:
Q  162 tgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttctttttgaac-ttaggatataatttcttgtaacatctttgtatcacacattt 258  Q
    |||||||||||||||||||| || || || |||||||||||||||||||| ||| | || |||| |||||| ||| ||| |||||||||||| |||||    
T  41163166 tgtgggtttgagtgacttgataactgggtcgaaattagggtttgttctttatgagcttttggatctaattttttggaacctctttgtatcactcattt 41163263  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 37387679 - 37387546
Alignment:
Q  65 cttgggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgt 164  Q
    |||||||||| |||||||||||||| ||||| | | ||||||||||| || ||| || | ||||| | ||| | | ||| || || ||||||||||||||    
T  37387679 cttgggttgggaaacacttcacaaacaccttcgatggtgagatctcatta-agatatatcaaaaaactttt-tctcttggttatttttaggattcattgt 37387582  T
Q  165 gggtttgagtgacttgaaaagtgtgtagaaattagg 200  Q
     ||||| ||||||||||||| || ||||||||||||    
T  37387581 cggtttaagtgacttgaaaaatgggtagaaattagg 37387546  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 44658345 - 44658435
Alignment:
Q  94 ttgggtagtgagatctcaatagagaaatgttaaaaa--tcatttctttgttgttttttcttaggattcattgtgggtttgagtgacttgaaa 183  Q
    |||||| ||||||||||| |||||||| | ||||||  || ||||||| || |||| |||| ||||| ||||||||||||||||||||||||    
T  44658345 ttgggtggtgagatctcattagagaaaggataaaaaaatc-tttctttattattttctcttgggattaattgtgggtttgagtgacttgaaa 44658435  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 34695397 - 34695507
Alignment:
Q  69 ggttggaaaacacttcacaaataccttgggtagtgagatctcaatagagaaatgttaaaaatcatttctttgttgttttttcttaggattcattgtgggt 168  Q
    |||||||||||||||||  |||||||||||||| ||||||||| || | || || |||| |  |  | ||| ||||||| |||||||||||| | | |||    
T  34695397 ggttggaaaacacttcatgaataccttgggtagcgagatctcattaaaaaagtgataaataaaaactttttattgttttatcttaggattca-tattggt 34695495  T
Q  169 ttgagtgacttg 180  Q
    ||||||||||||    
T  34695496 ttgagtgacttg 34695507  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 25517164 - 25517099
Alignment:
Q  146 ttttcttaggattcattgtgggtttgagtgacttgaaaagtgtgtagaaattagggtttgttcttt 211  Q
    |||| ||||| |||| |||| || || |||||||||||| |  |||||||||||||||||||||||    
T  25517164 tttttttagggttcactgtgagtgtgggtgacttgaaaaataagtagaaattagggtttgttcttt 25517099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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