View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15771_low_3 (Length: 380)
Name: NF15771_low_3
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 401743 - 402069
Alignment:
| Q |
6 |
acagatatgaaactgaatataggacatcacagccctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagag |
105 |
Q |
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| T |
401743 |
acagatatgaaactgaatataggacatcacagccctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagag |
401842 |
T |
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| Q |
106 |
gtttgttccacctgaaagggttcgaagattgagacctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaat |
205 |
Q |
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| T |
401843 |
gtttgttccatctgaaagggttcgaagattgagacctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaat |
401942 |
T |
|
| Q |
206 |
acaatctcgattttattcccagttaaaccagccggcttcaagcaattgagagagnnnnnnnnggtcttccaacacccttcaaacacagaaaccaattgtt |
305 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
401943 |
acaatctcgattttatccacagttaaaccagccggcttcaagcaattgagagagttttttttggtcttccaacacccttcaaacacagaaaccaattgtt |
402042 |
T |
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| Q |
306 |
tgggttagcagcctcccagcacaccat |
332 |
Q |
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||||||||||||||||||||||||||| |
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| T |
402043 |
tgggttagcagcctcccagcacaccat |
402069 |
T |
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