View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15771_low_4 (Length: 286)
Name: NF15771_low_4
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 34784862 - 34785144
Alignment:
| Q |
1 |
tttttaagaagttaaactaaactaatccaaattgagaatcgaacctaaaactttaaggaatagcacacttcaatgtctgaagtcaataccaccagaacaa |
100 |
Q |
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| T |
34784862 |
tttttaagaagttaaactaaactaatccaaattgagaatcgaacctaaaactttaaggaatagcacacttcaatgtctgaagtcaataccaccagaacaa |
34784961 |
T |
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| Q |
101 |
cctgagtgtgttatgctgcaaccgacttaagattggaacaaagtttaaaataataaaagaatcgacatttatattcttgtattacattatatattattac |
200 |
Q |
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| T |
34784962 |
cttgagtgtgttacgctgcaaccgacttaagattggaacaaagtttaaaataataaaagaatcgacatttatattcttgtattacattatatattattac |
34785061 |
T |
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| Q |
201 |
agctagtccttaagacatatctatctatctatatatgtaccccacactatataataagtccataccgtatccgcgcctttgct |
283 |
Q |
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| T |
34785062 |
agctagtccttaagacatatctatctatctatatatgtaccccacactatataataagtccataccgtatccgcgcctttgct |
34785144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 28115864 - 28115932
Alignment:
| Q |
34 |
gagaatcgaacctaaaactttaaggaatagcacacttcaatgtctgaagtcaataccaccagaacaacc |
102 |
Q |
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| T |
28115864 |
gagaatcgatcctaagaccttgatgaagagcatacttcaaagtctcaagtcaataccaccagaccaacc |
28115932 |
T |
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