View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15771_low_8 (Length: 252)
Name: NF15771_low_8
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 34785620 - 34785379
Alignment:
| Q |
11 |
agcagagacattcaaatttggaaccattcctgttgtaaggttcagcttcattgctattatactatatattattccaatcatcatactcacaaacaatcct |
110 |
Q |
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| T |
34785620 |
agcagagacattcaaatttggaaccattcctgttgtaaggttcagcttcattgctattatactatatattattccaatcatcatactcacaaacaatcct |
34785521 |
T |
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| Q |
111 |
ctcactgttatgtgttctgtccaatgttcatcggattggattacttcagctcctataactggcaacctttcttccatattctgattaatatctctttcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34785520 |
ctcactgttatgtgttctgtccaatgttcatcggattggattacttcagctcctataactggcaacctttcttccatattctgattaatatctctttcaa |
34785421 |
T |
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| Q |
211 |
tttccannnnnnnctcaccaaattccatgttgatgtttagtg |
252 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
34785420 |
tttccatttttttctcaccaaattccatgttgatgtttagtg |
34785379 |
T |
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