View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15771_low_9 (Length: 250)
Name: NF15771_low_9
Description: NF15771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15771_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 41125146 - 41124932
Alignment:
| Q |
12 |
atgaacaaagtgattaaccaagtgtcttagtaaaccatatactcgataaataaagttaatatacaataatgattaacttgataaaccccaagtgtcttag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41125146 |
atgaacaaagtgattaaccaagtgtcttagtaaaccatata-----taaataaagttaat-tacaataatgattaacttgataaaccccaagtgtcttag |
41125053 |
T |
|
| Q |
112 |
tatccaaacaagaatgaatctaagtgatgttccaccggttgaaatagagttaaaatactatttgaaattcatatattttctctgtaacaactatattttt |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41125052 |
tatccaaacaagaatgaatataagtgatgttccaccggttgaaatagagttaaaatactatttgaaattcatatattttctctgtaacaacta---tttt |
41124956 |
T |
|
| Q |
212 |
atatacaaaatgaacaatgttttt |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41124955 |
atatacaaaatgaacaatgttttt |
41124932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University