View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15772_high_6 (Length: 317)
Name: NF15772_high_6
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 24539473 - 24539759
Alignment:
| Q |
13 |
atactagggtcagtgttgaatggaaccaaacattgagaaaacatgttgcctccagctccaagggaagaacctatttgagaaatgagtgacaggggtcctc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24539473 |
atactagggtcagtgttgaatggaaccaaacattgagaaaacatgttgcctccggctccaagggaagaacctatttgagaaatgagtgacaggggtcctc |
24539572 |
T |
|
| Q |
113 |
ttccaagacctattaaacccatctcgcggtcattgaaaccactgttgttgtgtccgcatccaaaaataatgccttgaaaggccattggttcccctgtggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24539573 |
ttccaagacctattaaacccatctcgcggtcattgaaaccactgttgttgtgtccgcatccaaaaataatgccttgaaaggccactggttcccctgtggt |
24539672 |
T |
|
| Q |
213 |
tgatgttaaggtaagtgtttcttgtgccaacactccttgtgttatggaattatcggcgtaagagtaggtgtagttgcaagtcttctg |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24539673 |
tgatgttaaagtaagtgtttcttgtgccaacactccttgtgttatggaattatcggcgtaagagtaggtgtagttgcaagtcttctg |
24539759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 24546865 - 24547111
Alignment:
| Q |
13 |
atactagggtcagtgttgaatggaaccaaacattgagaaaacatgttgcctccagctccaagggaagaacctatttgagaaatgagtgacaggggtcctc |
112 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
24546865 |
atactagggttagtgtggaatggaaccaaacattgagaaaacatcttgcctcca------aaagaagaacctatttgagaaacgagtgacaagggtcctc |
24546958 |
T |
|
| Q |
113 |
ttccaagacctattaaacccatctcgcggtcattgaaaccac---tgttgttgtgtccgcatccaaaaataatgccttgaaaggccattggttcccctgt |
209 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||| ||||| || ||||| ||||| |||||| |
|
|
| T |
24546959 |
ttccaagacctattatacccatctctttgtcattgaaaacaccattgttgttatgtccacatccaaaaataacgcctttaagggccactggtttccctgt |
24547058 |
T |
|
| Q |
210 |
ggttgatgttaaggtaagtgtttcttgtgccaacactccttgtgttatggaat |
262 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
24547059 |
ggttgatgttaaggtaagtgtttcctgtgccaacactccttctgttatggaat |
24547111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 15797979 - 15798218
Alignment:
| Q |
13 |
atactagggtcagtgttgaatggaaccaaacattgagaaaacatgttgcctccagctccaagggaagaacctatttgagaaatgagtgacaggggtcctc |
112 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
15797979 |
atactagggttagtattgaatggaaccaaacattgagaaaacatgttgcctcca------agggaagaacctatttgagaaacaagtgacaagggtcctc |
15798072 |
T |
|
| Q |
113 |
ttccaagacctattaaacccatctcgcggtcattgaaaccac---tgttgttgtgtccgcatccaaaaataatgccttgaaaggccattggttcccctgt |
209 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| ||| | ||||||||||| ||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
15798073 |
ttccaagacctattatacccatctctttatcattgaaagcaccattattgttgtgtccacatccaaaaataactcctttaaaggccactggttcccctgt |
15798172 |
T |
|
| Q |
210 |
ggttgatgttaaggtaagtgtttcttgtgccaacactccttgtgtt |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15798173 |
ggttgatgttaaagtaagtgtttcttgtgccaacactccttgtgtt |
15798218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 43058821 - 43058750
Alignment:
| Q |
190 |
aaggccattggttcccctgtggttgatgttaaggtaagtgtttcttgtgccaacactccttgtgttatggaa |
261 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||| ||||| |
|
|
| T |
43058821 |
aaggccactggttcccctatggttgatgttaaggtaattgtttcttgtaccaacactccttatgttttggaa |
43058750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 1680024 - 1680185
Alignment:
| Q |
81 |
acctatttgagaaatgagtgacaggggtcctcttccaagacctattaaacccatctcgcggtcattgaaa---ccactgttgttgtgtccgcatccaaaa |
177 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||| || | ||||||||| ||||||| ||| || ||||||| ||||| || |||||| |
|
|
| T |
1680024 |
acctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaattccctgtgttgttatgtccacaaccaaaa |
1680123 |
T |
|
| Q |
178 |
ataatgccttgaaaggccattggttcccctgtggttgatgttaaggtaagtgtttcttgtgc |
239 |
Q |
| |
|
| ||| ||||||| || || |||| ||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
1680124 |
agaattccttgaagggaaataggtttccccgtgtttgatgttaaggtaactgtttcttgtgc |
1680185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 1661226 - 1661297
Alignment:
| Q |
81 |
acctatttgagaaatgagtgacaggggtcctcttccaagacctattaaacccatctcgcggtcattgaaacc |
152 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| ||||||| ||||| |
|
|
| T |
1661226 |
acctatttgagaaatgagtgatgttggtcctcctccaagaccaattagacccatctcatggtcattaaaacc |
1661297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 1668488 - 1668559
Alignment:
| Q |
81 |
acctatttgagaaatgagtgacaggggtcctcttccaagacctattaaacccatctcgcggtcattgaaacc |
152 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| ||||||| ||||| |
|
|
| T |
1668488 |
acctatttgagaaatgagtgatgttggtcctcctccaagaccaattagacccatctcatggtcattaaaacc |
1668559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University