View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15772_low_10 (Length: 276)
Name: NF15772_low_10
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 54472112 - 54472352
Alignment:
| Q |
21 |
ctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtc |
120 |
Q |
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| T |
54472112 |
ctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtc |
54472211 |
T |
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| Q |
121 |
attatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472212 |
attatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttata |
54472311 |
T |
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| Q |
221 |
tatctcctatttcnnnnnnnaataggaatttgcaaataagc |
261 |
Q |
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| T |
54472312 |
tatctcctatttctttttttaataggaatttgcaaataagc |
54472352 |
T |
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