View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15772_low_12 (Length: 238)
Name: NF15772_low_12
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 42677514 - 42677335
Alignment:
| Q |
59 |
ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcataatagaatcggtacaaacacttaaaaaacaaac |
158 |
Q |
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| T |
42677514 |
ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcacaatagaatcggtacaaacacttaaaaaacaaac |
42677415 |
T |
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| Q |
159 |
atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtat |
238 |
Q |
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| T |
42677414 |
atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcaaaaagcaaataattgtgcatagtat |
42677335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 42677553 - 42677520
Alignment:
| Q |
9 |
acatcatcaccacaaacaaaactcaccgtcacat |
42 |
Q |
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| T |
42677553 |
acatcatcaccacaaacaaaactcaccgtcacat |
42677520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 48968805 - 48968874
Alignment:
| Q |
165 |
tgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtat |
238 |
Q |
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| T |
48968805 |
tgaacatgttctgaaggtaccacaaaaacctgtagtag----gtgttcaaaaagcaaataattgtgcatagtat |
48968874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 15496097 - 15496130
Alignment:
| Q |
9 |
acatcatcaccacaaacaaaactcaccgtcacat |
42 |
Q |
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| T |
15496097 |
acatcatcaccacaaacaaaactcaccgccacat |
15496130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 6705719 - 6705752
Alignment:
| Q |
9 |
acatcatcaccacaaacaaaactcaccgtcacat |
42 |
Q |
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| T |
6705719 |
acatcatcaccacaaacaaaactcaccgccacat |
6705752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 40900403 - 40900436
Alignment:
| Q |
9 |
acatcatcaccacaaacaaaactcaccgtcacat |
42 |
Q |
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| T |
40900403 |
acatcatcaccacaaacaaaactcaccgccacat |
40900436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 40900464 - 40900512
Alignment:
| Q |
70 |
tgtatgaattaacctccccttacaatatttttcaattgatggctagcgt |
118 |
Q |
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| T |
40900464 |
tgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgt |
40900512 |
T |
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