View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15772_low_13 (Length: 237)
Name: NF15772_low_13
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 43261863 - 43262071
Alignment:
| Q |
12 |
cagcacagacagcaacagcactaaaaacacacccctctgcatnnnnnnnncagtcaaactgctacagcttccatccttaccgctgcaagcactcctccgg |
111 |
Q |
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| T |
43261863 |
cagcacagacagcaacaacactaaaaacacacccctctgcataaaaaaa-cagtcaaacggctacagcttccatccttaccgccgcaagcactcctccgg |
43261961 |
T |
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| Q |
112 |
acaccacacccactcataaaacatacacgtcgaggtagccaagaaaggacttgttcatatccttcattttacaccattacaacaatatcaacttcacatc |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43261962 |
acaccacacccactcataaaacatacacgccgaggtagccaagataggacttgttcatatccttcattttacaccattacaacaatatcaacttcacatc |
43262061 |
T |
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| Q |
212 |
agaagaaaaa |
221 |
Q |
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|||||||||| |
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| T |
43262062 |
agaagaaaaa |
43262071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 5526087 - 5526027
Alignment:
| Q |
161 |
cttgttcatatccttcattttacaccattacaacaatatcaacttcacatcagaagaaaaa |
221 |
Q |
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||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
5526087 |
cttgttcgtattcttcattttacaccattacaacaataacaacttcacatcaaaagaaaaa |
5526027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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