View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15772_low_14 (Length: 229)
Name: NF15772_low_14
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 45545067 - 45545279
Alignment:
| Q |
1 |
tttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggtgtaatgtcttttatttcatcacttcctgtaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45545067 |
tttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggtgttatgtcttttatttcatcacttcctgtaag |
45545166 |
T |
|
| Q |
101 |
ccaacgcaaatgaaagtattaatttcaatgtaaataaattgttgtcgagctaacaaagagtaaatttaactaacctctagtctttactactcagtcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45545167 |
ccaacgcaaatgaaagtattaatttcaatgtaaataaactgttgtcgagctaacaaagagtaaatttaactaacctctagtctttactactcagtcttaa |
45545266 |
T |
|
| Q |
201 |
attcctaaggtaa |
213 |
Q |
| |
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||||||||||||| |
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| T |
45545267 |
attcctaaggtaa |
45545279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 45550238 - 45550359
Alignment:
| Q |
1 |
tttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggtgtaatgtcttttatttcatcacttcctgtaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
45550238 |
tttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaatgtcttttatttcatcactttctggaag |
45550337 |
T |
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| Q |
101 |
ccaacgcaaatgaaagtattaa |
122 |
Q |
| |
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||||| || ||||||||||||| |
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| T |
45550338 |
ccaacacacatgaaagtattaa |
45550359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 45548943 - 45549047
Alignment:
| Q |
1 |
tttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggtgtaatgtcttttatttcatcacttcctgtaag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||| ||| | ||||||| |||| |||||||||||| |
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| T |
45548943 |
tttttggttctgtggtaggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttacttcaccacttcctgtaaa |
45549042 |
T |
|
| Q |
101 |
ccaac |
105 |
Q |
| |
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||||| |
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|
| T |
45549043 |
ccaac |
45549047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 45544196 - 45544281
Alignment:
| Q |
30 |
tcatgcacattcattctctcaagagattcctcgagtggtgtaatgtcttttatttcatcacttcctgtaagccaacgcaaatgaaa |
115 |
Q |
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|
|||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||| |||||||||||| || |||||| |
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| T |
45544196 |
tcatgcacattcattctctcaagagattcctcaagcggtgtaatgtcttttgtttcattactttctgtaagccaacacacatgaaa |
45544281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 45549864 - 45549989
Alignment:
| Q |
7 |
gttctgtggtaggttttgactcgtcat---gcacattcattctctcaagagattcctcgagtggtgtaatgtcttttatttcatcacttcctgtaagcca |
103 |
Q |
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|||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||| |
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| T |
45549864 |
gttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatgtcttttctttcat------ctgtaagcca |
45549957 |
T |
|
| Q |
104 |
acgcaaatgaaagtattaatttcaatgtaaataa |
137 |
Q |
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| T |
45549958 |
a--caaatcaaagtattaatctctatgtaaataa |
45549989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19692064 - 19692001
Alignment:
| Q |
67 |
gtgtaatgtcttttatttcatcacttcctgtaagccaacgcaaatgaaagtattaatttcaatg |
130 |
Q |
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||||||||| |||||||| ||||||| || | ||||||| || |||||||||||||| |||||| |
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| T |
19692064 |
gtgtaatgtattttatttaatcactttctatgagccaacacatatgaaagtattaatctcaatg |
19692001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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