View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15772_low_15 (Length: 217)
Name: NF15772_low_15
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 22600895 - 22600710
Alignment:
| Q |
14 |
caaagggagaaaatgaagtggacaaatagaacaaatgtaatgctgacctgaataaaagaatgattgtcaacaaagggtatgaatagcatgtgaatgaaaa |
113 |
Q |
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| T |
22600895 |
caaagagagaaaatgaagtggacaaatggaacaaatgcaatgctgacctaaataaaagaatgattgtcaacaaagggtgtgaaaagcatgtgaatgaaaa |
22600796 |
T |
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| Q |
114 |
ttaggaaagaaagtggattttggctttggtgtcagtgatgggtcaatggctttatgtaacccgagaattacaaagaagtgaggtctt |
200 |
Q |
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| T |
22600795 |
ttaggaaagaaagtggattttggctttggtgtcagtgatgggtcaatgcctttatgtaa-ccgagaattacaaagaagtgaggtctt |
22600710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 14270404 - 14270545
Alignment:
| Q |
64 |
aataaaagaatgattgtcaacaaagggtatgaatagcatgtgaatgaaaattaggaaagaaagtggattttggctttggtgtca-----gtgatgggtca |
158 |
Q |
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| T |
14270404 |
aataaaagaatgattgttaacaaagggtgtaaatagcacgtgaaagaaaattaggaaagaaagtggattttggctttggtgtgatgtgagtgatgggtca |
14270503 |
T |
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| Q |
159 |
atggctttatgtaacccgagaattac-aaagaagtgaggtct |
199 |
Q |
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| T |
14270504 |
atggctttatgtgacccgagaattacaaaagaagtgaagtct |
14270545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 9518889 - 9518710
Alignment:
| Q |
33 |
ggacaaatagaacaaatgtaatgctgacctgaataaaagaatgattgtcaac-aaagggtatgaatagcatgtgaatgaa----------aattaggaaa |
121 |
Q |
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| T |
9518889 |
ggacatatggaacaagtgcaatgctaacttgaataaaagagtgattgtcaacaaaagggtgtgaatagcaggtgaatgaaagtgaatgagaattaagaaa |
9518790 |
T |
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| Q |
122 |
gaaagtggattttggctttggtgtcagtgatgggtcaat-------ggctttatgtaacccgagaattacaaagaagtgaggtct |
199 |
Q |
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| T |
9518789 |
gaaagtgga--ttggctttggtgt-agtgatgggtcgatggaataaggctttatg--acccgagaattaaaaagaagtgaggtct |
9518710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 14270365 - 14270401
Alignment:
| Q |
14 |
caaagggagaaaatgaagtggacaaatagaacaaatg |
50 |
Q |
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| T |
14270365 |
caaagagagaaaatgaagtggacaaatggaacaaatg |
14270401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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