View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15772_low_5 (Length: 387)
Name: NF15772_low_5
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 32036306 - 32035977
Alignment:
| Q |
12 |
atgaattaaagaaaaagatgtagtctttcnnnnnnnntgtagatattaaataattgagacctctnnnnnnngttaaataatttagagagttttctagcaa |
111 |
Q |
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| T |
32036306 |
atgaattaaagaaaaagttgtagtctttcaaaaaaaatgtagatattaaataattgagacctctaaaaaaagttaaataatttagagagttttctagcaa |
32036207 |
T |
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| Q |
112 |
gatttcataatttagagatgaatttctagatatattaataaaaacacttttttt-cgtttgttaaccctaatgaattttannnnnnnnnatgaaaaaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||| |
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| T |
32036206 |
gatttcataatttagagatgaatttctagatatattaataaaaacacttttttttcgttttttaaccctaatgaattat----ttttttatgaaaaaatt |
32036111 |
T |
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| Q |
211 |
aaaatagttattaaaaatgnnnnnnn-atgagaagttgttcaaaacaattttatatgaagaattttagattcttttttgcaccaagaaaaagagtccatg |
309 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036110 |
aaaatagttattaaaaatgttttttttatgagaagttgttcaaaacaattttatatgaagaattttagattcttttttgcaccaagaaaaagagtccatg |
32036011 |
T |
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| Q |
310 |
ggagaagtgaggattcagggtaacaagcaaagaa |
343 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32036010 |
ggagaagtgaggattcagggtaacaagcaaagaa |
32035977 |
T |
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