View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15772_low_6 (Length: 346)

Name: NF15772_low_6
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15772_low_6
NF15772_low_6
[»] chr8 (12 HSPs)
chr8 (22-339)||(1797338-1797655)
chr8 (24-194)||(5203860-5204030)
chr8 (24-190)||(6230302-6230468)
chr8 (202-309)||(5203688-5203795)
chr8 (33-194)||(5174711-5174872)
chr8 (209-309)||(5193450-5193550)
chr8 (205-309)||(6230126-6230230)
chr8 (24-194)||(5193610-5193780)
chr8 (84-140)||(5183348-5183404)
chr8 (202-308)||(5174540-5174646)
chr8 (135-194)||(5170507-5170566)
chr8 (24-62)||(5183429-5183467)
[»] chr7 (3 HSPs)
chr7 (24-309)||(5177098-5177386)
chr7 (29-194)||(8552818-8552983)
chr7 (203-309)||(8553022-8553128)
[»] chr4 (2 HSPs)
chr4 (99-194)||(49610752-49610847)
chr4 (204-296)||(49610620-49610712)
[»] chr6 (1 HSPs)
chr6 (205-309)||(16472251-16472354)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 1797338 - 1797655
Alignment:
Q  22 ggaaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  1797338 ggaaatatttcaaattttggcatctatcaaaatcaatcttatatggtgaaaaaaaatcatccggacaataacaaagtttctcaagatacggggcatcaat 1797437  T
Q  122 atatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatgtcgacaaacttcaaagttatatgttca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797438 atatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatgtcgacaaacttcaaagttatatgttca 1797537  T
Q  222 atcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatgagaaaataccctacaatc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1797538 atcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatgagaaaataccctacaatc 1797637  T
Q  322 tttatatgatctctgctc 339  Q
    |||||||||| |||||||    
T  1797638 tttatatgatttctgctc 1797655  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 5204030 - 5203860
Alignment:
Q  24 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 123  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||        ||| | ||||||||||||| |||||||||| |||||||||||||||    
T  5204030 aaatatttcaaattttggcacctatcaaaatcaatcttaaacggtgcgtcaaaatcaccaggacaataacaaaatttctcaagacacggggcatcaatat 5203931  T
Q  124 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 194  Q
    | |||||||| ||||||| ||||||||||||||| | ||||||||||||||||||  ||||||||||||||    
T  5203930 aaacctcctgtattccttgaacatcaactgtcttcaacttaagtagaccatgcatattcaaagacttcatg 5203860  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 6230468 - 6230302
Alignment:
Q  24 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 123  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||        | | | ||||||||||  | |||||| ||| |||||| ||||||||    
T  6230468 aaatatttcaaattttggcatctatcaaaatcaatcttaaatggtgcgtcaaaataaccaggacaataacgtaatttctcgagagacggggaatcaatat 6230369  T
Q  124 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagactt 190  Q
    | ||||| || ||||||| ||||||||| ||||| | |||||||||||||| ||| |||||||||||    
T  6230368 aaacctcttgtattccttgaacatcaaccgtcttcaacttaagtagaccatccatactcaaagactt 6230302  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 5203795 - 5203688
Alignment:
Q  202 acttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaa 301  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||| |||||| ||||||| ||| |||||| |||| |||||||||||| |||| ||||    
T  5203795 acttcaaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctctcgaaaggacagcccacaatgacaatacttttaa 5203696  T
Q  302 tgagaaaa 309  Q
     |||||||    
T  5203695 cgagaaaa 5203688  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 5174872 - 5174711
Alignment:
Q  33 aaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatatatacctcct 132  Q
    ||||||| ||| || ||||||||||||||| ||||||        ||| | |||||||||||||  ||||||||| |||||||||||||||| ||||| |    
T  5174872 aaatttttgcacctttcaaaatcaatcttaaatggtgcgtcaaaatcaccaggacaataacaaaaattctcaagacacggggcatcaatataaacctctt 5174773  T
Q  133 ggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 194  Q
    | ||||||| ||||||||||||||| |||||   || |||| ||||||||||||| ||||||    
T  5174772 gtattccttgaacatcaactgtcttcagctttgataaaccacgcatgctcaaagatttcatg 5174711  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 5193550 - 5193450
Alignment:
Q  209 agttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatgagaaa 308  Q
    |||||||||||||||||| |||||||||||||| | |||||| ||| ||||||||||| ||  || |||| |||||||||||| |||||||| |||||||    
T  5193550 agttatatgttcaatcaaaggacaacaagaaatgagatgttcgattgcatgttcgtctctcacaaggacaccccacaatgacaatactcttagtgagaaa 5193451  T
Q  309 a 309  Q
    |    
T  5193450 a 5193450  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 6230230 - 6230126
Alignment:
Q  205 tcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatga 304  Q
    ||||||||||||||||||| || |||||||||||||| | |||||||||| ||||||||||| | |||| ||||| |  |||||||| || |||||||||    
T  6230230 tcaaagttatatgttcaattaaaggacaacaagaaatgagatgttcaattgcatgttcgtctctggaaaggacatgcttcaatgacaatattcttaatga 6230131  T
Q  305 gaaaa 309  Q
    |||||    
T  6230130 gaaaa 6230126  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 5193780 - 5193610
Alignment:
Q  24 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 123  Q
    |||||||||||||||||||| |||||||||||||||||| |||||         | | | ||||||||| | | |||||||||| ||||||| ||||| |    
T  5193780 aaatatttcaaattttggcacctatcaaaatcaatcttaaatggttcgtcaaaataaccaggacaataaaataatttctcaagacacggggcgtcaatgt 5193681  T
Q  124 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 194  Q
    | | ||| || ||||||  ||||||||| ||||| | |||||||||||||  ||| |||||||||||||||    
T  5193680 aaatctcttgtattcctcgaacatcaaccgtcttcaacttaagtagaccaaccatactcaaagacttcatg 5193610  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 5183404 - 5183348
Alignment:
Q  84 ggacaataacaaagtttctcaagatacggggcatcaatatatacctcctggattcct 140  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  5183404 ggactataacaaaatttctcaagatactgggcatcaatataaacctcctggattcct 5183348  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 5174646 - 5174540
Alignment:
Q  202 acttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaa 301  Q
    ||||||||||||||||||||||||| ||||||| |||||| | ||  |||||| |||| || | ||   ||| ||| ||||||||||||| |||||| ||    
T  5174646 acttcaaagttatatgttcaatcaaaggacaacgagaaatcagattctcaattgcatgctcatattcacaaaggacctcccacaatgacaatactctcaa 5174547  T
Q  302 tgagaaa 308  Q
    |||||||    
T  5174546 tgagaaa 5174540  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 5170566 - 5170507
Alignment:
Q  135 attccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 194  Q
    ||||||| ||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||    
T  5170566 attccttgaacatcaactgtctttagctttagtaggccatgtatgctcaaagatttcatg 5170507  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 5183467 - 5183429
Alignment:
Q  24 aaatatttcaaattttggcatctatcaaaatcaatctta 62  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5183467 aaatatttcaaattttggcatctatcaaaaacaatctta 5183429  T

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Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 5177386 - 5177098
Alignment:
Q  24 aaatatttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatat 123  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||        ||||| |||||| |||  | ||||||||||||||||||||||||||    
T  5177386 aaatatttcaaattttggcatctatcgaaaccaatcttatatggtgcgaaaaaatcatcgggacaaaaacgcaatttctcaagatacggggcatcaatat 5177287  T
Q  124 atacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttca---tgtcgacaaacttcaaagttatatgttc 220  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||| ||||||||||||||||    
T  5177286 atacctcctggattccttcaactttaactgtcttgagcttaagtagaccatgaatgctcaaagacttcatgttgtcgacaaacctcaaagttatatgttc 5177187  T
Q  221 aatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatgagaaaa 309  Q
    |||||| |||||||||||||| | |||||||||| ||| ||||||| | |||| ||||| |  ||||||||  ||||||||||||||||    
T  5177186 aatcaaaggacaacaagaaatgagatgttcaattgcattttcgtctctagaaaggacatgcttcaatgacaaaactcttaatgagaaaa 5177098  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 8552818 - 8552983
Alignment:
Q  29 tttcaaattttggcatctatcaaaatcaatcttatatggtgnnnnnnnntcatccggacaataacaaagtttctcaagatacggggcatcaatatatacc 128  Q
    ||||||||||  ||| |||||||||| ||||||||||||||         ||||  |||||||| | || | |||||||   ||| |||| |||||||||    
T  8552818 tttcaaatttctgcaactatcaaaatgaatcttatatggtgcgttcaaaacatcatgacaataatatagatactcaagacttgggacatctatatatacc 8552917  T
Q  129 tcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 194  Q
    || || ||||| | |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  8552918 tcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 8552983  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 8553022 - 8553128
Alignment:
Q  203 cttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaat 302  Q
    ||||||||||||||||||||| || |||||||||||||| | ||| |||||| ||||||| |||| | |||  |||  ||||||||||| |||||| |||    
T  8553022 cttcaaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatcttccaaaagaacaatccacaatgacaatactctcaat 8553121  T
Q  303 gagaaaa 309  Q
    || ||||    
T  8553122 gaaaaaa 8553128  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 49610847 - 49610752
Alignment:
Q  99 ttctcaagatacggggcatcaatatatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 194  Q
    ||||||||| | |||||||| | ||| ||||| || ||||||| |||||||||||||||||||||  |||||||| ||||||||||| ||||||||    
T  49610847 ttctcaagacatggggcatcgacataaacctcttgtattccttgaacatcaactgtcttgagctttggtagaccaagcatgctcaaacacttcatg 49610752  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 49610712 - 49610620
Alignment:
Q  204 ttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtact 296  Q
    ||||||||||||||||||||||| |||||||||||||| | |||||||||| |||| || | |  | ||| ||| ||||||||||||| ||||    
T  49610712 ttcaaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttcccaaaaggacttcccacaatgacaatact 49610620  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 16472354 - 16472251
Alignment:
Q  205 tcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaatga 304  Q
    |||||||||||||||||||||| ||||||  |||||| || || |||||| |||||| |||| |||||| ||||   || ||||||| |||||| |||||    
T  16472354 tcaaagttatatgttcaatcaaaggacaatgagaaatgaattgctcaattgcatgtt-gtctctcgaaaggacacaacataatgacaatactctcaatga 16472256  T
Q  305 gaaaa 309  Q
    |||||    
T  16472255 gaaaa 16472251  T

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