View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15772_low_7 (Length: 345)
Name: NF15772_low_7
Description: NF15772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15772_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 19597611 - 19597288
Alignment:
| Q |
1 |
tgcaccaccatcttcatcaaagaaaccactaccttcttcatcagagaaaccaccatcttcactgcagccacatcaatcttcactgccaccaaggccattt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||| |
|
|
| T |
19597611 |
tgcaccaccatcttcatcaaagaacccacta---tcttcatcagagaaaccaccatcttcactgcagccacagcaatcttcattgccacgaaggccgttt |
19597515 |
T |
|
| Q |
101 |
tcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597514 |
tcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattc |
19597415 |
T |
|
| Q |
201 |
taccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgtattatgatatggtaccgtattggccactacgaccaccttgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19597414 |
taccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgtattataatatggtaccgtattggccactacgaccaccttgtta |
19597315 |
T |
|
| Q |
301 |
ttcttttccgtcacagccaccaccacc |
327 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
19597314 |
ctcttttccgtcacagccaccaccacc |
19597288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
135 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
192 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| |||||| ||||| |||||||||||| |
|
|
| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University