View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_high_11 (Length: 416)

Name: NF15773_high_11
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_high_11
NF15773_high_11
[»] chr6 (1 HSPs)
chr6 (5-406)||(8159034-8159435)
[»] chr4 (3 HSPs)
chr4 (77-287)||(18701668-18701878)
chr4 (5-57)||(18701878-18701930)
chr4 (287-320)||(18701618-18701651)
[»] chr3 (2 HSPs)
chr3 (92-370)||(4084080-4084374)
chr3 (5-56)||(4084389-4084440)
[»] chr8 (11 HSPs)
chr8 (92-370)||(44312207-44312489)
chr8 (98-370)||(44301308-44301596)
chr8 (93-278)||(43896073-43896255)
chr8 (98-284)||(44306520-44306704)
chr8 (114-254)||(43895568-43895705)
chr8 (5-56)||(43896271-43896322)
chr8 (5-56)||(44312504-44312555)
chr8 (114-254)||(44305992-44306129)
chr8 (373-408)||(44312137-44312172)
chr8 (373-407)||(43895856-43895890)
chr8 (376-405)||(44306284-44306313)
[»] chr5 (1 HSPs)
chr5 (95-270)||(35856845-35857017)
[»] chr7 (1 HSPs)
chr7 (155-198)||(15040305-15040348)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 5 - 406
Target Start/End: Original strand, 8159034 - 8159435
Alignment:
Q  5 acaaatgttaacacgggtaagaagattgagattcctcgtttgggtaagagacgcgaacatgatgagagtgaggaagttaatgaaatcaaggaagttgatg 104  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||    
T  8159034 acaaatgttaacactggtaagaagattgagattcctcgtttgggtaagagacgtgaacatgatgagagtgaggaagttgataaaatcaaggaagttgatg 8159133  T
Q  105 aagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159134 aagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgc 8159233  T
Q  205 cgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataattggtttggtttattagc 304  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159234 tgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataattggtttggtttattagc 8159333  T
Q  305 tttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgatactgtgttctgcatttaacacttgatcctatctc 404  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159334 tttgcaatggtttgtttcttatttataacttattttttatgctgaatctgttgcttaattattgatactgtgttctgcatttaacacttgatcctatctc 8159433  T
Q  405 tg 406  Q
    ||    
T  8159434 tg 8159435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 77 - 287
Target Start/End: Complemental strand, 18701878 - 18701668
Alignment:
Q  77 gaagttaatgaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccg---atg 173  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||    
T  18701878 gaagttaataaaatcgaggaagttgatgaagctcatgctggagaaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatg 18701779  T
Q  174 ggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcat 273  Q
    ||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||  ||  | | |||||||||||||||||||||||||||    
T  18701778 ggtctgttagatatacaatgacttctgct---gatgttcctgcttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcat 18701682  T
Q  274 tctagagaaataat 287  Q
    ||||||||||||||    
T  18701681 tctagagaaataat 18701668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 18701930 - 18701878
Alignment:
Q  5 acaaatgttaacacgggtaagaagattgagattcctcgtttgggtaagagacg 57  Q
    |||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  18701930 acaaatgttaacactggtaagaagattcagattcctcgtttgggcaagagacg 18701878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 18701651 - 18701618
Alignment:
Q  287 ttggtttggtttattagctttgcaatggtttgtt 320  Q
    ||||||||||||||||||||||||||||||||||    
T  18701651 ttggtttggtttattagctttgcaatggtttgtt 18701618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 92 - 370
Target Start/End: Complemental strand, 4084374 - 4084080
Alignment:
Q  92 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtt------tgatgctcatcttgaatctggagatacttttaccgatgggtctgttagat 185  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||      |||||||  |||| ||||||||||||||||||| || |||||| ||||||    
T  4084374 aaggcagttgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattagat 4084275  T
Q  186 atataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaat- 284  Q
    ||| ||||||||||||   ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||| ||||||||     
T  4084274 atacaatgacttctgc---cgatgttcctgcttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccagagaaatg 4084178  T
Q  285 ------------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 370  Q
                | ||||||||| || |||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4084177 atcctacttaccagttggtttggcttgttagctttactatggtttgttgcttatttataacttattttttatggtgaatttgttgcttaattattgat 4084080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 4084440 - 4084389
Alignment:
Q  5 acaaatgttaacacgggtaagaagattgagattcctcgtttgggtaagagac 56  Q
    |||||||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  4084440 acaaatgttaacaccggtaagaagattaagattcctcgtttgtttaagagac 4084389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 92 - 370
Target Start/End: Complemental strand, 44312489 - 44312207
Alignment:
Q  92 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  44312489 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataa 44312390  T
Q  192 tgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaat------- 284  Q
    ||||||   ||||||||||||        || |||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||| |           
T  44312389 tgactt---ctgccgatgttc--------tccgtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatccta 44312301  T
Q  285 -------aattggtttggtttattagctttgcaatggtttgtttcttatttataactta-ttttttatggtgaatctgttgcttaattattgat 370  Q
           | ||||||||| || ||| || |||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  44312300 cttcgccagttggtttggcttgttaactatgctttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgat 44312207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 98 - 370
Target Start/End: Complemental strand, 44301596 - 44301308
Alignment:
Q  98 gttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgactt 197  Q
    ||||||||||||||||| |||||||||||| ||||||| | |  |  |||| ||||||||||||||||||| ||||||||||||||||||| |||| |||    
T  44301596 gttgatgaagctcatgccggagaaattgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtctt 44301497  T
Q  198 ctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattc-----attctagagaaat-------- 284  Q
    ||||   |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||     |||| || |||||            
T  44301496 ctgc---cgatgttcctacttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctac 44301400  T
Q  285 ------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 370  Q
          | || |||||| || |||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  44301399 ttacccagtttgtttggcttgttagctttgctatgttttgttgcttatttataacttattttttatggtaaatctgctgcttaattattgat 44301308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 43896255 - 43896073
Alignment:
Q  93 aggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataat 192  Q
    |||||||||||||||||||||||||||| ||| || ||||||| ||||||  |||| |||||||||||||||| || ||||||||||||||||||| |||    
T  43896255 aggaagttgatgaagctcatgctggagagattattattgtgttagatgctattcttaaatctggagatactttcactgatgggtctgttagatatacaat 43896156  T
Q  193 gacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctag 278  Q
    |||||   ||||||||||||||| ||||||  ||||| |||||| ||||||||||||||||||||||||| || ||||||||||||    
T  43896155 gactt---ctgccgatgttcctgattattctatctcataagattctggagagaaattttcaaatggtgtggatggattcattctag 43896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 98 - 284
Target Start/End: Complemental strand, 44306704 - 44306520
Alignment:
Q  98 gttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgactt 197  Q
    |||||||||||||||||||||||||||||| |  |||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  44306704 gttgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctgttagatatacaatgactt 44306605  T
Q  198 ctgctgccgatgttcctgcttattcggtctcaaaagattgtggagaga-aattttcaaatggtgtgaattgattcattctagagaaat 284  Q
       |||||||||||||| ||||||| |||||| |||||| ||||||||   |||||||||||||||||| |||||||||||| |||||    
T  44306604 ---ctgccgatgttcctacttattctgtctcataagattctggagagagttttttcaaatggtgtgaatggattcattctagggaaat 44306520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 43895705 - 43895568
Alignment:
Q  114 ctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgccgatgttcc 213  Q
    ||||| ||||||||  |||||||| |||| |   ||||||||||||||||||| | ||||||||||||||||||  |||||| |   ||| | || |||     
T  43895705 ctggacaaattgttgctgtgtttggtgctgagtgtgaatctggagatacttttgctgatgggtctgttagatattcaatgacct---ctgtcaatattct 43895609  T
Q  214 tgcttattcggtctcaaaagattgtggagagaaattttcaa 254  Q
    | ||| ||||||||||||||||| ||||| | |||||||||    
T  43895608 tacttgttcggtctcaaaagattctggagggcaattttcaa 43895568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 43896322 - 43896271
Alignment:
Q  5 acaaatgttaacacgggtaagaagattgagattcctcgtttgggtaagagac 56  Q
    |||||||||||||| |||||||||||| ||||||||||||||  ||||||||    
T  43896322 acaaatgttaacactggtaagaagattcagattcctcgtttgtttaagagac 43896271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 44312555 - 44312504
Alignment:
Q  5 acaaatgttaacacgggtaagaagattgagattcctcgtttgggtaagagac 56  Q
    ||||| |||||||| |||||||||||| |||||||| |||||||||||||||    
T  44312555 acaaacgttaacactggtaagaagattaagattccttgtttgggtaagagac 44312504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 44306129 - 44305992
Alignment:
Q  114 ctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgccgatgttcc 213  Q
    ||||| ||||||||  |||||||| |||| |   ||||||||||||||||||| | |||||||| |||||||||  |||||| |   ||| | || |||     
T  44306129 ctggacaaattgttgctgtgtttggtgctgagtgtgaatctggagatacttttgctgatgggtccgttagatattcaatgacct---ctgtcaatattct 44306033  T
Q  214 tgcttattcggtctcaaaagattgtggagagaaattttcaa 254  Q
    | ||| ||||||||||||||||| ||||| | |||||||||    
T  44306032 tacttgttcggtctcaaaagattctggagggcaattttcaa 44305992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 408
Target Start/End: Complemental strand, 44312172 - 44312137
Alignment:
Q  373 tgtgttctgcatttaacacttgatcctatctctgct 408  Q
    |||||||||||||||||| |||||||||||||||||    
T  44312172 tgtgttctgcatttaacagttgatcctatctctgct 44312137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 43895890 - 43895856
Alignment:
Q  373 tgtgttctgcatttaacacttgatcctatctctgc 407  Q
    ||||||||||||||||||| |||||||||||||||    
T  43895890 tgtgttctgcatttaacacctgatcctatctctgc 43895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 376 - 405
Target Start/End: Complemental strand, 44306313 - 44306284
Alignment:
Q  376 gttctgcatttaacacttgatcctatctct 405  Q
    ||||||||||||||||||||||||||||||    
T  44306313 gttctgcatttaacacttgatcctatctct 44306284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 270
Target Start/End: Original strand, 35856845 - 35857017
Alignment:
Q  95 gaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatga 194  Q
    |||||| |||| |||||||||||| |||||||| |||| | ||||| | ||  || | | ||||| || ||||| ||||||||||||||||     ||||    
T  35856845 gaagttaatgaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgttagatgggctatga 35856944  T
Q  195 cttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgatt 270  Q
    |||||||   | |||||| || |||||||||||||||||||| | | ||| ||| |||||||| ||||||| ||||    
T  35856945 cttctgc---caatgttcttgattattcggtctcaaaagattctagcgagcaatcttcaaatgttgtgaatggatt 35857017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
Q  155 ggagatacttttaccgatgggtctgttagatatataatgacttc 198  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||    
T  15040348 ggagatacttttactgatgggtctgttaaatatacaatgacttc 15040305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University