View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_15 (Length: 359)
Name: NF15773_high_15
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 27986300 - 27986635
Alignment:
| Q |
8 |
gagcagagataccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27986300 |
gagcagagataccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttc |
27986399 |
T |
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| Q |
108 |
ttcatccgttaacgatggaatatcgtctacaacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgt |
207 |
Q |
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|||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27986400 |
ttcatcggttaacgatggaagatcgtcgataacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgt |
27986499 |
T |
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| Q |
208 |
agaatatattgcgccgcgatttctgcggcggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcattgtgagaggtattaggttcgg |
307 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27986500 |
agaatatatcgcgccgcgatttctgcggcggttggtggtggtttgtttgtggtggtttgtggaggagaagatggagcattgtgagaggtattagattcgg |
27986599 |
T |
|
| Q |
308 |
gattaggctcaggttcgggaatgggattgggattag |
343 |
Q |
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| T |
27986600 |
gattaggctcaggttcgggaatgggattgggattag |
27986635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 28043602 - 28043937
Alignment:
| Q |
8 |
gagcagagataccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttc |
107 |
Q |
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| T |
28043602 |
gagcagagataccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttc |
28043701 |
T |
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| Q |
108 |
ttcatccgttaacgatggaatatcgtctacaacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgt |
207 |
Q |
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| T |
28043702 |
ttcatcggttaacgatggaagatcgtcgataacgccgaacgccgccgtaacttccgacgtagacagtggttttggcgcaaaagataacggcggggattgt |
28043801 |
T |
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| Q |
208 |
agaatatattgcgccgcgatttctgcggcggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcattgtgagaggtattaggttcgg |
307 |
Q |
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| T |
28043802 |
agaatatatcgcgccgcgatttctgcggcggttggtggtggtttgtttgtggtggtttgtggaggagaagatggagcattgtgagaggtattagattcgg |
28043901 |
T |
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| Q |
308 |
gattaggctcaggttcgggaatgggattgggattag |
343 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28043902 |
gattaggctcaggttcgggaatgggattgggattag |
28043937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 27241251 - 27241303
Alignment:
| Q |
236 |
cggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcattg |
288 |
Q |
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| T |
27241251 |
cggttggtggtggtttgtttgaggtggtttgtggatgagaaggtggagcattg |
27241303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 27247124 - 27247176
Alignment:
| Q |
236 |
cggttggtggtggtttgtttgaggtggtttgtggaggagaagatggagcattg |
288 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
27247124 |
cggttggtggtggtttgtttgaggtggtttgtggatgagaaggtggagcattg |
27247176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 27241303 - 27241340
Alignment:
| Q |
306 |
gggattaggctcaggttcgggaatgggattgggattag |
343 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
27241303 |
gggattaggctcagtttcgggaatgggattgggattag |
27241340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 27247176 - 27247213
Alignment:
| Q |
306 |
gggattaggctcaggttcgggaatgggattgggattag |
343 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
27247176 |
gggattaggctcagtttcgggaatgggattgggattag |
27247213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 23890422 - 23890593
Alignment:
| Q |
8 |
gagcagagataccagtttccaactgattactccaccaagaggttccagaaaactgatcaccggaggaagtagttaagatcgaactcagtggcttctgttc |
107 |
Q |
| |
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|||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||| || ||||||||| ||||||||||| |||| |
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| T |
23890422 |
gagcagcgataccagtttccaactgattattctaccaagaggttccagaaaaccgataaccggaggaagttgtcaagatcgaagtcagtggcttcggttc |
23890521 |
T |
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| Q |
108 |
ttcatccgttaacgatggaatatcgtctacaacgccgaacgccgccgtaacttccgacgtagacagtggttttgg |
182 |
Q |
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|||||| ||||||||||||| |||| || ||||||||||||||||| ||||||||||| | |||| ||||||| |
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| T |
23890522 |
ttcatcggttaacgatggaagatcg---acgacgccgaacgccgccgtgacttccgacgtcgtcagttgttttgg |
23890593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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