View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_18 (Length: 347)
Name: NF15773_high_18
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 40746384 - 40746708
Alignment:
| Q |
18 |
cgaaacaccttaaataggactatctcatgtgcagaacctatgagaaaccaaaatagttataaaaagctatagtaataattatgttatagaacaaacaggc |
117 |
Q |
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| T |
40746384 |
cgaaacaccttaaataggactatctcatgtgcagaacctatgagaaaccaaaatagttataaaaagctatagtaataattatgttatagaacaaacaggc |
40746483 |
T |
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| Q |
118 |
attaatttcctgtttgtatagattgtcaaaaaagaaatcatgtcattagagtttggtaattctaatttttctctgctaatgaaatcaatggtatcattga |
217 |
Q |
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| T |
40746484 |
attaatttcctgttcgtatagattgtcaaaaaagaaatcatgtcattagagtttggtaattctaatttttctctgctaatgaaatcaatggtatcattga |
40746583 |
T |
|
| Q |
218 |
agaagatattaaccattcaagtaagatctggagctcatgaaaaatatacaaatcctcacaccgagggatcctaaaactaacatgaattccacaagctcat |
317 |
Q |
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| T |
40746584 |
agaagatattaaccattcaagtaagatctggagctcatgaaaaatatacaaatcctcacaccgagggatcctaaaactaacatgaattccacaagctcat |
40746683 |
T |
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| Q |
318 |
ccctagctgaagacactgacctatg |
342 |
Q |
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| T |
40746684 |
ccctagctgaagacactgatctatg |
40746708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 334
Target Start/End: Original strand, 40731662 - 40731775
Alignment:
| Q |
221 |
agatattaaccattcaagtaagatctggagctcatgaaaaatatacaaatcctcacaccgagggatcctaaaactaacatgaattccacaagctcatccc |
320 |
Q |
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| T |
40731662 |
agatattaaccattcaagtaagatttggtgctcacaaagagtatacaagtcatcacaccaagggatcctaaaactaacatgaatttcacaagtacatctc |
40731761 |
T |
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| Q |
321 |
tagctgaagacact |
334 |
Q |
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|||||| ||||||| |
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| T |
40731762 |
tagctgcagacact |
40731775 |
T |
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