View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_20 (Length: 346)
Name: NF15773_high_20
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 43050891 - 43050727
Alignment:
| Q |
16 |
gcacagagtccagccatctgattaaaggagatgtcaactgcaatatttttcactgtgcatttgacaacccttacctgcaatccaattgccaaacataaaa |
115 |
Q |
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| T |
43050891 |
gcacagagtccagccatctgattaaaggagatgtcaactgcaatatttttcactgtgcatttgacaacccttacctgcaatccaattgccaaacataaaa |
43050792 |
T |
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| Q |
116 |
aaggaagtcttataaagttgagagatataattatactgaaaacattaaacacaattttccaatca |
180 |
Q |
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| T |
43050791 |
aaggaagtcttataaagttgagagatataattatactgaaaacattaaacacaattttccaatca |
43050727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 43034916 - 43034751
Alignment:
| Q |
14 |
gagcacagagtccagccatctgattaaaggagatgtcaactgcaatatttttcactgtgcatttgacaacccttacctgcaatccaattgccaaacataa |
113 |
Q |
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| T |
43034916 |
gagcatagagtccagccatctgattaaaggagatgtcaactgcaatatttttcactgtgcatttgacaacccttacctgcagtccaattgccaaacata- |
43034818 |
T |
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| Q |
114 |
aaaaggaagtcttataaagttgagagatataattatactgaaaacattaaacacaattttccaatca |
180 |
Q |
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| T |
43034817 |
aaaaggaagtcttataaagtcgagagatataattatattgaaaacattaaacacaattttccaatca |
43034751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 43050683 - 43050580
Alignment:
| Q |
224 |
cgataacggcagtggaaacacttctttttcactacgatgtaaatgtaacattccaaaaataatatatacgtagcgttataacaccgctatagccaccatt |
323 |
Q |
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| T |
43050683 |
cgataacggcagtggaaacacttctttttcactacgatgtaaatgtaacattccaaaaataatatatacgtagcgttatagcaccgctatagccaccatt |
43050584 |
T |
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| Q |
324 |
taac |
327 |
Q |
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|||| |
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| T |
43050583 |
taac |
43050580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 43034707 - 43034640
Alignment:
| Q |
224 |
cgataacggcagtggaaacacttctttttcac-tacgatgtaaatgtaacattccaaaaataatatata |
291 |
Q |
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||||||| |||||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||| |
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| T |
43034707 |
cgataactgcagtggaaacacttctttttcacataggatgtaaatg-aacatttcaaaaataatatata |
43034640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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