View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_high_21 (Length: 345)

Name: NF15773_high_21
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_high_21
NF15773_high_21
[»] scaffold1246 (1 HSPs)
scaffold1246 (6-345)||(621-960)


Alignment Details
Target: scaffold1246 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold1246
Description:

Target: scaffold1246; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 345
Target Start/End: Complemental strand, 960 - 621
Alignment:
Q  6 tatcaaaggcttcaataaggttttcaaaattccttatggtgtgaatttggataagatcaaaggaaattacaatgaagaggaatggattttgaatatttac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  960 tatcaaaggcttcaataaggttttcaaaattccttatggtgtgaatttggataagatcaaaggaaattacaatgaagaggaatggattttgaatatttac 861  T
Q  106 atgccaaagttggtaaaagggatttttggtcttaaggttgaggaagtcaaggaacaagagaatgataaaagaaaatcagagctagagaaaggtgaaattg 205  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||||||||||| ||| |||||||||    
T  860 atgccaaattttgtaaaagggatttttggtcttaagtttgaggaagtcaaggaacaagagtttgataaaagaatatcagagctagataaatgtgaaattg 761  T
Q  206 atcatgtttctagtagtgttggtgagacaagccaaaaagagtcaaaagattctgaatttcaacacatgaaaggaagtgacaatggcatagagaagatgct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  760 atcatgtttctagtagtgttggtgagacaagccaaaaagagtcaaaagattctgaatttcaacacatgaaaggaagtgacaatggcatagagaagatgct 661  T
Q  306 tgatgataacgtcgatgaaaataataaagagacgatacaa 345  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  660 tgatgataacgtcgatgaaaataataaagagactatacaa 621  T

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