View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_high_22 (Length: 324)

Name: NF15773_high_22
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_high_22
NF15773_high_22
[»] chr3 (3 HSPs)
chr3 (54-139)||(6180000-6180085)
chr3 (20-58)||(6181372-6181410)
chr3 (20-58)||(6221547-6221585)
[»] chr5 (2 HSPs)
chr5 (192-251)||(29832021-29832081)
chr5 (198-244)||(17304882-17304928)


Alignment Details
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 6180085 - 6180000
Alignment:
Q  54 ctattcacctcaacaaacttccttcaccttgtcacaagaatatcttatacatcaaaaaccatcatcttatcagtctaaaaaccatc 139  Q
    ||||||||||||||||||||||||||||||||||  | |||||||| | |||||||| ||||||||||||||||||||||||||||    
T  6180085 ctattcacctcaacaaacttccttcaccttgtcatgataatatctttttcatcaaaacccatcatcttatcagtctaaaaaccatc 6180000  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 6181410 - 6181372
Alignment:
Q  20 ctagacctttaatattaatagatcctataatcatctatt 58  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  6181410 ctagacccttaatattattagatcctataatcatctatt 6181372  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 6221585 - 6221547
Alignment:
Q  20 ctagacctttaatattaatagatcctataatcatctatt 58  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  6221585 ctagacccttaatattattagatcctataatcatctatt 6221547  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 29832081 - 29832021
Alignment:
Q  192 tgatgtttgtttttattttgatattatagcatag-attatgttaaagcacctagcaaacta 251  Q
    ||||| |||||||  ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  29832081 tgatgattgttttgtttttgatattatagcatagaattatgttaaatcacctagcaaacta 29832021  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 17304928 - 17304882
Alignment:
Q  198 ttgtttttattttgatattatagcatagattatgttaaagcacctag 244  Q
    |||||||||||||| || ||||||||| | |||||||||||||||||    
T  17304928 ttgtttttattttggtagtatagcataaactatgttaaagcacctag 17304882  T

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