View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_high_23 (Length: 309)
Name: NF15773_high_23
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 49 - 295
Target Start/End: Complemental strand, 11861475 - 11861229
Alignment:
| Q |
49 |
acatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaagtttctcaagt |
148 |
Q |
| |
|
|||||||||||||| |||| ||| || |||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11861475 |
acatctttcaatagtgagtgtttggagtgaactcaaagacttgaaaccttgtggtagagacgctaaattaaaacaatctctaatgtgaagttcctcaagt |
11861376 |
T |
|
| Q |
149 |
gaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaaggatttcaattgtgaattagaag |
248 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11861375 |
gaaatgaagtttttgagccatctttctggtggagaatggtcgatgcgctcaactaccatggacttcaatttggagaagggtttcaattgtgaattagaag |
11861276 |
T |
|
| Q |
249 |
ttttgatttcaggagcagtgtaatccattgtatccttcattgatatt |
295 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
11861275 |
ttttgatttcaggagcagcgtacttcattgtatccttcattgatatt |
11861229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 11829352 - 11829171
Alignment:
| Q |
46 |
ttcacatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaagtttctca |
145 |
Q |
| |
|
||||||||||||||||||||||||| || || || || |||||||||| |||||| ||||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
11829352 |
ttcacatctttcaatagaaagtgatatgagtgagcttaaaaacttgaaaccttgtggtagagactccaaaataaaacaatctctaatgtgaagttcctca |
11829253 |
T |
|
| Q |
146 |
agtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaagg |
227 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| ||||| || || ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11829252 |
agtgaaatgaagtttttaagccaactctctggtggagattggtcaatgcgctcaattaccatggacttcaatttcgagaagg |
11829171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 12040215 - 12040072
Alignment:
| Q |
104 |
agagactttaaattaaaacaatctctaatgtgaagtttctcaagtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaatta |
203 |
Q |
| |
|
|||||||| |||| |||||||||| ||||||||||| || |||||||||||||||||| |||||| | | || ||||| || || || |||||||||| |
|
|
| T |
12040215 |
agagacttcaaatggaaacaatctcgaatgtgaagttccttaagtgaaatgaagtttttaagccatctcttcggtggagattggtcaatacgctcaatta |
12040116 |
T |
|
| Q |
204 |
ccatggacttcaatttggagaaggatttcaattgtgaattagaa |
247 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
12040115 |
ccatggacttcaatttggagaagggttgtgattgtgaattagaa |
12040072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 11901039 - 11901221
Alignment:
| Q |
45 |
cttcacatctttcaatagaaagtgattgaagcgaactcaataacttgaaactttgtggcagagactttaaattaaaacaatctctaatgtgaagtttctc |
144 |
Q |
| |
|
|||||||||| ||||||| |||||| || |||||||| ||||||||| |||||| | |||||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
11901039 |
cttcacatctctcaatagtgagtgatatgagtgaactcaaagacttgaaaccttgtggtaaagactttaaaataacacaatctctaatgtgaagttcctc |
11901138 |
T |
|
| Q |
145 |
aagtgaaatgaagtttttgagccatttttctgggggagaatgctcgatgcgctcaattaccatggacttcaatttggagaagg |
227 |
Q |
| |
|
||| |||| |||||||| ||||| | ||||| |||| ||||| || |||||||||||||| || ||||||||||| |||| |
|
|
| T |
11901139 |
aagcgaaacaaagtttttaagccacctctctggtggagtttgctcaatacgctcaattaccattgatttcaatttggaaaagg |
11901221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University