View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_28 (Length: 295)
Name: NF15773_high_28
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_28 |
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| [»] scaffold1246 (1 HSPs) |
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Alignment Details
Target: scaffold1246 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold1246
Description:
Target: scaffold1246; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 650 - 432
Alignment:
| Q |
9 |
gtcgaagaaaataataaagagacgatacaaaaaggagaggaggacgatggcattaagagggacgtaacggaatgcacaatagaaaaagaaaaagaagaat |
108 |
Q |
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| T |
650 |
gtcgatgaaaataataaagagactatacaaaaaggagtggaggacgatggcattaagagggatgtaacttaatgcttaatagaaaatgaaaaagaagaat |
551 |
T |
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| Q |
109 |
ctaagttgaagattgaggatagtaaggtaaactctacaagagaaatagagaaagatgttggtaaagatatctcacataacattgtagatacaagccaaag |
208 |
Q |
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| T |
550 |
ctaagttgaagattgaggatagtaaggtaaactctacaagagaaatagagaaagatgttggtaaagatatctcacataacattgtagatacaagccaaag |
451 |
T |
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| Q |
209 |
agttgctgaagggtcaatg |
227 |
Q |
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| T |
450 |
agttgttgaagggtcaatg |
432 |
T |
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