View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15773_high_47 (Length: 237)

Name: NF15773_high_47
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15773_high_47
NF15773_high_47
[»] chr6 (35 HSPs)
chr6 (1-222)||(26143126-26143347)
chr6 (1-222)||(25538801-25539022)
chr6 (1-222)||(25579980-25580201)
chr6 (1-145)||(25482003-25482147)
chr6 (1-222)||(26056187-26056401)
chr6 (1-222)||(26076157-26076371)
chr6 (68-218)||(25511268-25511417)
chr6 (1-222)||(26646740-26646958)
chr6 (1-222)||(26752708-26752926)
chr6 (2-78)||(27214682-27214758)
chr6 (2-78)||(27234470-27234546)
chr6 (46-131)||(26802748-26802833)
chr6 (23-126)||(27337870-27337969)
chr6 (23-126)||(27398610-27398709)
chr6 (46-131)||(27592816-27592901)
chr6 (46-131)||(27677410-27677495)
chr6 (46-131)||(27679252-27679337)
chr6 (46-131)||(27706198-27706283)
chr6 (22-115)||(26656271-26656361)
chr6 (22-115)||(26762242-26762332)
chr6 (4-78)||(28781403-28781477)
chr6 (4-78)||(28786542-28786616)
chr6 (4-78)||(28792663-28792737)
chr6 (137-222)||(25483454-25483538)
chr6 (2-70)||(26617884-26617952)
chr6 (2-70)||(26723812-26723880)
chr6 (46-102)||(27698319-27698375)
chr6 (6-56)||(26848926-26848976)
chr6 (43-139)||(26884468-26884561)
chr6 (2-56)||(26959428-26959482)
chr6 (2-56)||(26975314-26975368)
chr6 (46-88)||(27718218-27718260)
chr6 (79-139)||(27530988-27531048)
chr6 (23-63)||(28098221-28098261)
chr6 (23-59)||(31284571-31284607)
[»] chr1 (3 HSPs)
chr1 (1-111)||(28127485-28127592)
chr1 (1-126)||(28164154-28164276)
chr1 (1-76)||(268195-268270)
[»] chr4 (5 HSPs)
chr4 (1-154)||(18679331-18679480)
chr4 (1-143)||(18699175-18699313)
chr4 (1-154)||(18731268-18731417)
chr4 (1-111)||(18723891-18723998)
chr4 (1-78)||(18655313-18655390)
[»] scaffold0419 (1 HSPs)
scaffold0419 (4-76)||(7789-7861)
[»] scaffold0277 (2 HSPs)
scaffold0277 (4-76)||(13483-13555)
scaffold0277 (4-76)||(4522-4594)
[»] chr8 (1 HSPs)
chr8 (1-76)||(29273621-29273696)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-88)||(3259-3346)
scaffold0349 (46-88)||(14195-14237)
[»] chr2 (1 HSPs)
chr2 (23-63)||(3279986-3280026)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26143126 - 26143347
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26143126 aaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 26143225  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaataggaacacattttctattaatgttttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26143226 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatctactctcaaagcttaaataggaacacattttctattaatgttttt 26143325  T
Q  201 aaaacaagtgtaagttatttat 222  Q
    ||||||||||||||||||||||    
T  26143326 aaaacaagtgtaagttatttat 26143347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25538801 - 25539022
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538801 aaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 25538900  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaataggaacacattttctattaatgttttt 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  25538901 aatcttgtttttcctttctatattttatttcattaatttttatgcctaaataatctactcttaaaacttaaataggaacacattttctattaatgttttt 25539000  T
Q  201 aaaacaagtgtaagttatttat 222  Q
    ||||||||||||||||||||||    
T  25539001 aaaacaagtgtaagttatttat 25539022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25579980 - 25580201
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579980 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 25580079  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaataggaacacattttctattaatgttttt 200  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||| |||||| || |||  ||||||||||||||||| |||||||||||||||||||    
T  25580080 aaacttctttttcctttctatattttatttctttaattgttatgcctcaataatctaatcttcaagcttaaataggaacagattttctattaatgttttt 25580179  T
Q  201 aaaacaagtgtaagttatttat 222  Q
    ||||||||||||||||| ||||    
T  25580180 aaaacaagtgtaagttaattat 25580201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25482003 - 25482147
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25482003 aaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaatttgtccggctatcattatagtcctcatgagtaccccactttactta 25482102  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25482103 aaacttgtttttcctttctatattttatttcattaatttttatgc 25482147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26056187 - 26056401
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  26056187 aaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtccggctatcattatagtcctcatgagtaccctactttactta 26056286  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaataggaacacattttctattaatgttttt 200  Q
    || |||||||||      ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| | | |   | ||||||| |||| ||||    
T  26056287 aatcttgttttt------tatattttatttctttaatttttatgcctaaataatctactcttaaagcttaaacatggaggga-tttctatcaatggtttt 26056379  T
Q  201 aaaacaagtgtaagttatttat 222  Q
    ||||| ||||||||||||||||    
T  26056380 aaaactagtgtaagttatttat 26056401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26076157 - 26076371
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  26076157 aaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtccggctatcattatagtcctcatgagtaccctactttactta 26076256  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaataggaacacattttctattaatgttttt 200  Q
    || |||||||||      ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| | | |   | ||||||| |||| ||||    
T  26076257 aatcttgttttt------tatattttatttctttaatttttatgcctaaataatctactcttaaagcttaaacatggaggga-tttctatcaatggtttt 26076349  T
Q  201 aaaacaagtgtaagttatttat 222  Q
    ||||| ||||||||||||||||    
T  26076350 aaaactagtgtaagttatttat 26076371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 25511268 - 25511417
Alignment:
Q  68 attatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagc 167  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||| |||||    
T  25511268 attatagtcctcatgggtaccctactttacttaaatcttgtttttcttttttatattttatttctttaatttttttgcctaaataatctactcttaaagc 25511367  T
Q  168 ttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttat 218  Q
    ||||| | | |  |  |||||||||||| ||||||||||||||||||||||    
T  25511368 ttaaacatgga-gcgatttctattaatggttttaaaacaagtgtaagttat 25511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26646740 - 26646958
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    ||||||| ||| ||||||| |||||||||| | ||||| ||||||||||||||||||||||| || |||||||||||   ||||||||||||||||||||    
T  26646740 aaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcc---tgggtaccccactttactta 26646836  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaatagg-aacacat-tttctattaatgttt 198  Q
    || |||||||||||||| |||||||| |||  ||||||||| | || | | ||| |  ||| |||||||||||||| ||||||| ||| |||||||||||    
T  26646837 aaccttgtttttcctttttatattttctttatttaattttttttcc-acaaaatctcatcttaaagcttaaataggaaacacatatttttattaatgttt 26646935  T
Q  199 ttaaaacaagtgtaagttatttat 222  Q
    || |||||||| ||| ||||||||    
T  26646936 tt-aaacaagtataaattatttat 26646958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26752708 - 26752926
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    ||||||| ||| ||||||| |||||||||| | ||||| ||||||||||||||||||||||| || |||||||||||   ||||||||||||||||||||    
T  26752708 aaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcc---tgggtaccccactttactta 26752804  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataatttactctcaaagcttaaatagg-aacacat-tttctattaatgttt 198  Q
    || |||||||||||||| |||||||| |||  ||||||||| | || | | ||| |  ||| |||||||||||||| ||||||| ||| |||||||||||    
T  26752805 aaccttgtttttcctttttatattttctttatttaattttttttcc-acaaaatctcatcttaaagcttaaataggaaacacatatttttattaatgttt 26752903  T
Q  199 ttaaaacaagtgtaagttatttat 222  Q
    || |||||||| ||| ||||||||    
T  26752904 tt-aaacaagtataaattatttat 26752926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 27214682 - 27214758
Alignment:
Q  2 aaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcct 78  Q
    ||||||||||||| ||||   |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  27214682 aaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcattatagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 27234546 - 27234470
Alignment:
Q  2 aaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcct 78  Q
    ||||||||||||| ||||   |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  27234546 aaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcattatagtcct 27234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 26802748 - 26802833
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttc 131  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||| |||||||||||| | | ||||||| || |||||||||||||    
T  26802748 gctgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatcctatttttcccttttatattttatttc 26802833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 27337969 - 27337870
Alignment:
Q  23 aatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctata 122  Q
    |||||||||| ||||||||||||||||||||||| |||||| | |||| |||   ||| |||||||||||||||||||| | || |||||||||| ||||    
T  27337969 aatggaagatggctcttacccaagctgctaacttctccggccaccattttag---tcaagggtaccccactttacttaata-ttatttttcctttttata 27337874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 27398709 - 27398610
Alignment:
Q  23 aatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctata 122  Q
    |||||||||| ||||||||||||||||||||||| |||||| | |||| |||   ||| |||||||||||||||||||| | || |||||||||| ||||    
T  27398709 aatggaagatggctcttacccaagctgctaacttctccggccaccattttag---tcaagggtaccccactttacttaata-ttatttttcctttttata 27398614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 27592901 - 27592816
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttc 131  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | | ||||||| || | |||||||||||    
T  27592901 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 27592816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 27677495 - 27677410
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttc 131  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | | ||||||| || | |||||||||||    
T  27677495 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 27677410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 27679252 - 27679337
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttc 131  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | | ||||||| || | |||||||||||    
T  27679252 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 27679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 27706283 - 27706198
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttc 131  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | | ||||||| || | |||||||||||    
T  27706283 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 27706198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 26656271 - 26656361
Alignment:
Q  22 caatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcct 115  Q
    ||||||||||| ||||| ||| ||||||| |||||||| ||||| |||| |||||   | ||||||||||||||||||||| ||||||||||||    
T  26656271 caatggaagatggctctgaccaaagctgccaacttgtctggctaccattgtagtc---aagggtaccccactttacttaaatcttgtttttcct 26656361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 26762242 - 26762332
Alignment:
Q  22 caatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcct 115  Q
    ||||||||||| ||||| ||| ||||||| |||||||| ||||| |||| |||||   | ||||||||||||||||||||| ||||||||||||    
T  26762242 caatggaagatggctctgaccaaagctgccaacttgtctggctaccattgtagtc---aagggtaccccactttacttaaatcttgtttttcct 26762332  T

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Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 28781403 - 28781477
Alignment:
Q  4 aacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcct 78  Q
    ||||||||| | |||| |||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||||    
T  28781403 aacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 28786542 - 28786616
Alignment:
Q  4 aacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcct 78  Q
    ||||||||| | |||| |||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||||    
T  28786542 aacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 28792663 - 28792737
Alignment:
Q  4 aacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcct 78  Q
    ||||||||| | |||| |||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||||    
T  28792663 aacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 25483454 - 25483538
Alignment:
Q  137 tttttatgcctaaataatttactctcaaagcttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttat 222  Q
    |||||||||||||||||| |||||| |||||||||| | | |   |||| ||||||||| ||||||||||||||||||||||||||    
T  25483454 tttttatgcctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttat 25483538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 26617884 - 26617952
Alignment:
Q  2 aaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcatt 70  Q
    ||||||||||||| ||||   |||||||||||||||||| |||||||  |||||| || ||||||||||    
T  26617884 aaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatt 26617952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 26723812 - 26723880
Alignment:
Q  2 aaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcatt 70  Q
    ||||||||||||| ||||   |||||||||||||||||| |||||||  |||||| || ||||||||||    
T  26723812 aaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatt 26723880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 27698375 - 27698319
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 102  Q
    |||||||||||||||||||| ||| |||||||||   ||||||| ||||||||||||    
T  27698375 gctgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaa 27698319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 26848926 - 26848976
Alignment:
Q  6 catggagcgattgcgtcaatggaagatagctcttacccaagctgctaactt 56  Q
    ||||||||| |||||| ||||||||| |||||||| ||| |||||||||||    
T  26848926 catggagcgtttgcgtaaatggaagaaagctcttaaccatgctgctaactt 26848976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 26884468 - 26884561
Alignment:
Q  43 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttcattaattt 139  Q
    |||| |||||||||||||||||| |||| ||||| |   ||||| ||||||||||||||| | | |||| | ||| |||||||| |||| |||||||    
T  26884468 caagttgctaacttgtccggctaccattttagtctt---gggtatcccactttacttaaatcatattttccttttttatattttctttctttaattt 26884561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 26959428 - 26959482
Alignment:
Q  2 aaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaactt 56  Q
    ||||||||||||| ||||   ||||||||| |||||||| |||||||||||||||    
T  26959428 aaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaactt 26959482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 26975314 - 26975368
Alignment:
Q  2 aaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaactt 56  Q
    ||||| ||||||| |||| | ||||||||| |||||||| |||||||||||||||    
T  26975314 aaaacttggagcggttgcttaaatggaagaaagctcttaaccaagctgctaactt 26975368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 27718260 - 27718218
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtacc 88  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  27718260 gctgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 27531048 - 27530988
Alignment:
Q  79 catgggtaccccactttacttaaaacttgtttttcctttctatattttatttcattaattt 139  Q
    |||||||| ||||||||||||||| | | ||||||| || |||||||| |||| |||||||    
T  27531048 catgggtagcccactttacttaaatcctatttttcccttttatattttctttctttaattt 27530988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 28098261 - 28098221
Alignment:
Q  23 aatggaagatagctcttacccaagctgctaacttgtccggc 63  Q
    |||||||||| ||||||| |||||| |||||||||||||||    
T  28098261 aatggaagatggctcttaaccaagcagctaacttgtccggc 28098221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 31284571 - 31284607
Alignment:
Q  23 aatggaagatagctcttacccaagctgctaacttgtc 59  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  31284571 aatggaagatagctcttactcaagcagctaacttgtc 31284607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 28127592 - 28127485
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    |||||||| ||| ||||||    
T  28127592 aaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtcc---agggtaccctactatactta 28127496  T
Q  101 aaacttgtttt 111  Q
    || ||||||||    
T  28127495 aatcttgtttt 28127485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28164276 - 28164154
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    |||||||  ||  ||||||    
T  28164276 aaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtcc---agggtaccttacaatactta 28164180  T
Q  101 aaacttgtttttcctttctatatttt 126  Q
    || |||||||||||| | ||||||||    
T  28164179 aatcttgtttttcctctttatatttt 28164154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 268270 - 268195
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtc 76  Q
    |||||||||||||| |||| |||||||||| | ||||| ||||||||| |||||||||| ||||| |||| |||||    
T  268270 aaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtc 268195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 18679480 - 18679331
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||| |||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||| ||||||   ||||||| || |||||||||    
T  18679480 aaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagtcc---tgggtactcctctttactta 18679384  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataat 154  Q
    |  |||| ||||||||| |  |||||||||  ||||| ||||| ||| ||||||    
T  18679383 attcttg-ttttcctttttgcattttatttatttaatatttattcctcaataat 18679331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 18699313 - 18699175
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||| |||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||| |||| |   ||||||| || |||||||||    
T  18699313 aaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagttc---tgggtactcctctttactta 18699217  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttat 143  Q
    |  |||| ||||||||| |  |||||||||  |||||||||||    
T  18699216 attcttg-ttttcctttttgcattttatttatttaatttttat 18699175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 18731417 - 18731268
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||| |||| |||||||||| | ||||| ||| |||||||||||||||||||||| |||| |||   |||||||||| || |||||||||    
T  18731417 aaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttag---tcatgggtactcctctttactta 18731321  T
Q  101 aaacttgtttttcctttctatattttatttcattaatttttatgcctaaataat 154  Q
    |  |||| |||||| || |  |||||||||  ||||||||||| ||| ||||||    
T  18731320 attcttg-ttttccattttgcattttatttatttaatttttattcctcaataat 18731268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 18723998 - 18723891
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttactta 100  Q
    |||||||||||||| |||| |||||||||| | ||||| ||| |||||||||||||||||||||| |||| ||||||   ||||||| || |||||||||    
T  18723998 aaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcc---tgggtactcctctttactta 18723902  T
Q  101 aaacttgtttt 111  Q
    |  ||||||||    
T  18723901 attcttgtttt 18723891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18655390 - 18655313
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcct 78  Q
    |||||||||||||| |||| |||||||||| | ||||| ||| |||||||||||||||||||||| |||| |||||||    
T  18655390 aaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcct 18655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 7789 - 7861
Alignment:
Q  4 aacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtc 76  Q
    |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||    
T  7789 aacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtc 7861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 13555 - 13483
Alignment:
Q  4 aacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtc 76  Q
    |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||    
T  13555 aacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtc 13483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 4594 - 4522
Alignment:
Q  4 aacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtc 76  Q
    ||||||||| | |||| |||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||    
T  4594 aacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtc 4522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29273696 - 29273621
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtc 76  Q
    ||||||||||| || |||| |||||||||| | ||||| ||||||||| |||||||||| ||||| |||| |||||    
T  29273696 aaaaacatggatcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtc 29273621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3346 - 3259
Alignment:
Q  1 aaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacc 88  Q
    |||||||||||| | ||||  | ||||||  | ||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  3346 aaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 14237 - 14195
Alignment:
Q  46 gctgctaacttgtccggctatcattatagtcctcatgggtacc 88  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  14237 gctgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 3279986 - 3280026
Alignment:
Q  23 aatggaagatagctcttacccaagctgctaacttgtccggc 63  Q
    |||||||||| ||||||| |||||| |||||||||||||||    
T  3279986 aatggaagatggctcttaaccaagcagctaacttgtccggc 3280026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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