View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_49 (Length: 227)
Name: NF15773_high_49
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 48592265 - 48592071
Alignment:
| Q |
22 |
acgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgag |
121 |
Q |
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| T |
48592265 |
acgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgag |
48592166 |
T |
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| Q |
122 |
aggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatgtcca |
216 |
Q |
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| T |
48592165 |
aggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgaagatgtcca |
48592071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 48601960 - 48601766
Alignment:
| Q |
22 |
acgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgag |
121 |
Q |
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| T |
48601960 |
acgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgag |
48601861 |
T |
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| Q |
122 |
aggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatgtcca |
216 |
Q |
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| T |
48601860 |
aggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgaagatgtcca |
48601766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 23232067 - 23232261
Alignment:
| Q |
22 |
acgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgag |
121 |
Q |
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| T |
23232067 |
acgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaactataaatcgag |
23232166 |
T |
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| Q |
122 |
aggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatgtcca |
216 |
Q |
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| T |
23232167 |
cagagccaagtcgaagggatataagaggtccatatcgctcagagaggtcgcggaaggcatgatgaataagtggtttaaggagatgaagatgtcca |
23232261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 23224736 - 23224924
Alignment:
| Q |
24 |
gttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagag |
123 |
Q |
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| T |
23224736 |
gttgatggcaatgttcattttacgggaagaataaacaagctcgtttgttttgagaaactcttttgcgagtgatggggaactaacaacgataaatggaaca |
23224835 |
T |
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| Q |
124 |
gagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatg |
212 |
Q |
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| T |
23224836 |
gaaccaagtcgaagggatataaggggtccatatcgatcagagaggtcgcgaaaggcttgatgaacgaggggtttgaggagatgaagatg |
23224924 |
T |
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