View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_51 (Length: 207)
Name: NF15773_high_51
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_51 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 16011922 - 16011826
Alignment:
| Q |
111 |
ctaacttgttcaatatcacgttcaggatctgccattccatctgcaagaaattgtaaggaaaccagtgaagaagacaaaggtcaagcgtcattctttc |
207 |
Q |
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| T |
16011922 |
ctaacttgttcaatatcacgttcaggatctgccattccatctgaaagaaattgtaaggaaaccagtgaagaagacaaaggtcaagcgtcattctttc |
16011826 |
T |
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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16012027 - 16011943
Alignment:
| Q |
1 |
cactttcaatcttaagtgccgtgtcacatattttgaaacaaatatgatcaaacaaatatgacaagaattgtaatattttctagct |
85 |
Q |
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| T |
16012027 |
cactttcaatcttaagtgtcgtgtcacatattttgaaacaaatatgatcaaacaaatatgacaaaaattgtaatattttccagct |
16011943 |
T |
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