View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_high_9 (Length: 451)
Name: NF15773_high_9
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 436
Target Start/End: Original strand, 11023050 - 11023458
Alignment:
| Q |
29 |
agaagaagaaaaaggagaggtagaagagtcacataaactaaaa-aatgggaacagaatccaaaccattgaaaatctacatgctcccattttttgcacaag |
127 |
Q |
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||||||||||||| |||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023050 |
agaagaagaaaaaagagaagtagaagaatcacataagctaaaaaaatgggaacagaatccaaaccattgaaaatctacatgctcccattttttgcacaag |
11023149 |
T |
|
| Q |
128 |
gacacttaatccctctggtaaacttagctcgtttagtagcatcaaaataccaacatgtaactatcataacaacaccttccaatgctcaactcttcgataa |
227 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
11023150 |
gacacttaatccctcttgtaaacttagctcgattagtagcatccaaaaaccaacatgtaaccatcataacaacaccttcaaatgctcaactcttcgataa |
11023249 |
T |
|
| Q |
228 |
aacaatcgaagaagaaaaagccgttggccaccatatccgcgtccatatcatcaaattcccatcagcccaactcggtctacctaccggtgttgaaaatctt |
327 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11023250 |
aacaatcgaagaagaaaaagccgccggccaccatatccgcgtccatatcatcaaattcccatcagcccaactcggtctacctaccggcgttgaaaatctt |
11023349 |
T |
|
| Q |
328 |
ttcgctgcttccgataaccaaactgccggtaaaattcacatggctgctcattttgttaaagcggatattgaagagttcatgaaagaaaacccgcctgatg |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023350 |
ttcgctgcttccgataaccaaactgccggtaaaattcacatggctgctcatttcgttaaagcggatattgaagagttcatgaaagaaaacccgcctgatg |
11023449 |
T |
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| Q |
428 |
tgtttattt |
436 |
Q |
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||||||||| |
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| T |
11023450 |
tgtttattt |
11023458 |
T |
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