View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15773_low_1 (Length: 560)
Name: NF15773_low_1
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 64 - 415
Target Start/End: Complemental strand, 8037417 - 8037065
Alignment:
| Q |
64 |
cttcagttataaatataacagattatacagcttaatccaatttttacagtataaagagagtatcctcggccttgtccataactacagagattaatctctc |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037417 |
cttcagttataaatataacagattacacagcttaatccaatttttacagtataaagagagtatcctcggccttgtccataactacagagattaatctctc |
8037318 |
T |
|
| Q |
164 |
ctgtggtaaatgattgcacgcgnnnnnnn-gctctccctcaagagttttaatgttgctacattctaatgactgaatttgaattaagactattaaaaccaa |
262 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8037317 |
ttgtcataaatgattgcacggaaaaaagaagctctccctcaagagttttaatgttgctacattctaatgactgaatttgaattaagactattaaaaccaa |
8037218 |
T |
|
| Q |
263 |
atcatcttatccaatcactatcgggctagcttgatccattttaattatcaatttaccataaacataatacatacataggtatcaaaatatccaaagcaga |
362 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
8037217 |
atcatgttatccaatcactatcgggctagcttgatccattttaattatcaatttaccataaacacaatacatatataggtatcaaaatatccaaagcaga |
8037118 |
T |
|
| Q |
363 |
aaacaaaattggtgaacttagggacgccaaagaattgctaatagtacaatacc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
8037117 |
aaacaaaattggtgaacttagggacgccaaagaattgctaattgtacagtacc |
8037065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 544
Target Start/End: Complemental strand, 8036793 - 8036758
Alignment:
| Q |
509 |
cgtataggcaggagctagccaagtagacattgttaa |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8036793 |
cgtataggcaggagctagccaagtagacattgttaa |
8036758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 516
Target Start/End: Complemental strand, 8037075 - 8037039
Alignment:
| Q |
480 |
tgtagagtacctcatgagcgacatcctaacgtatagg |
516 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
8037075 |
tgtacagtacctcatgagcgacatcctaccgtatagg |
8037039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University