View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_12 (Length: 394)
Name: NF15773_low_12
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 12958841 - 12959189
Alignment:
| Q |
21 |
atccttaggcgactgatgaatgactatttaaccattttattcagtacatcgtttaatttcaaggcaaccagaattaattattgatgaaaacctgaacttg |
120 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
12958841 |
atccttaggcgactgatgaatgaccatttaaccattttattcaatacatcgtttaatttcaaggcaagcagaatt----attgatgaaaacctgaacttg |
12958936 |
T |
|
| Q |
121 |
ttgtgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12958937 |
ttgtgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatat |
12959036 |
T |
|
| Q |
221 |
tatgtttttgtataattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatat |
320 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
12959037 |
tatgtttttgtataattgattctgaatcagtccttctgttcttttcaaagcgttacctcattaatattatccttaatttcgttcaacccaatttacatat |
12959136 |
T |
|
| Q |
321 |
tatagtaatattaaaggagacagtaaaaatgtccaacgaaaaaagatattgtt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12959137 |
tatagtaatattaaaggagacagtaaaaatgtccaacaaaaaaagatattgtt |
12959189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 375
Target Start/End: Original strand, 37868181 - 37868531
Alignment:
| Q |
21 |
atccttaggcgactgatgaatgactatttaaccattttattcagtacatcgtttaatttcaaggcaaccagaattaattattgatgaaaacctgaacttg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
37868181 |
atccttaggcgactgatgaatgactatttaaccattttattcagtacatcgtttaatttcaaggcaagcagaatt----attgatgaaaacctgaacttg |
37868276 |
T |
|
| Q |
121 |
ttgtgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatat |
220 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37868277 |
ttgtgtgtatattgatgactcttgttgttggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatat |
37868376 |
T |
|
| Q |
221 |
tatgtttttgtataattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatat |
320 |
Q |
| |
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||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
37868377 |
tatgtttttgtataattgattatgaatcattccttctgttcttttcaaagcgttacctcattaatattatccttaatttcgttcaacccaatttacatat |
37868476 |
T |
|
| Q |
321 |
tatagtaatattaaaggagacagtaaaaatgtccaacgaaaaaagatattgttct |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
37868477 |
tatagtaatattaaaggagacagtaaaaatgtccaacaaaaaaagatatcgttct |
37868531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 10368069 - 10367804
Alignment:
| Q |
21 |
atccttaggcgactgatgaatgactatttaaccattttattcagtacatcgtttaatttcaaggcaaccagaattaattattgatgaaaacctgaacttg |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |
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| T |
10368069 |
atccttaggcgactgatgaatgaccatttaaccattttatttagtacatcgtttaatttcaaggcaagcagaatta----ttgatgaaaaccttaacttg |
10367974 |
T |
|
| Q |
121 |
ttgtgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
10367973 |
ttgtgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatctaaatggataaattatgtgtgtttatat |
10367874 |
T |
|
| Q |
221 |
tatgtttttgtataattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattat |
290 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10367873 |
tatgtttttgtataattgattttgaatcagtccttctgttcttttcaaagcgttacctcattaatattat |
10367804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 29739329 - 29738979
Alignment:
| Q |
21 |
atccttaggcgactgatgaatgactatttaaccattttattcagtacatcgtttaatttcaaggcaaccagaattaattattgatgaaaacctgaacttg |
120 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
29739329 |
atccttaggcgacttatgaatgaccatttaaacattttattcagtacatcgtttaatttcaaggcaagcagaacta----ttgatgaaaacctgaacttg |
29739234 |
T |
|
| Q |
121 |
ttgtgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttatat |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29739233 |
ttgtgtgtatattgatgactcttgttgttggaaacaactcgaatagctattcttcttcaatttacggcaatttaaatggataaattatgtgtgtttatat |
29739134 |
T |
|
| Q |
221 |
tatgtttttgtataattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacatat |
320 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
29739133 |
tatgtttttgtataattgattttgaatcagtccttctgttcttttcaaagtgttacctcattaatattatccttaatttcgttcaacccaatttatatat |
29739034 |
T |
|
| Q |
321 |
tatagtaatattaaaggagacagtaaaaatgtccaacgaaaaaagatattgttct |
375 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
29739033 |
tatggtaatattaaaggagacggtaaaaatgtccaacaaaaaaagatattgttct |
29738979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 353
Target Start/End: Original strand, 5421574 - 5421894
Alignment:
| Q |
21 |
atccttaggcgactgatgaatgactatttaacca-ttttattcagtacatcgtttaatttcaaggcaaccagaattaattattgatgaaaacctgaactt |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
5421574 |
atccttaggcgactgatgaatgaccttttaaccaattttattcagtacattgtttaatttcaaggcaagcagaatta----ttgatgaaaacctgaactt |
5421669 |
T |
|
| Q |
120 |
gttg-tgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaattatgtgtgtttat |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5421670 |
gttgctgtgtatattgatgactcttgttgctggaaacaactcgaatagctattcttcttcaatttagggcaatttaaatggataaatta--tgtgtttat |
5421767 |
T |
|
| Q |
219 |
attatgtttttgtataattgattctaaattagtccttctgttcttttcaaagcgttacctcataaatattattcttaatttcgttcaacccaatttacat |
318 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | || ||||||||||||||||| ||| |||||||| |||||| | |||| ||||||||||||| |
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|
| T |
5421768 |
attatgtttttgtatagttgattctgaatcaatcattctgttcttttcaaagtgtt--------aatattatccttaatcttgttcgacccaatttacat |
5421859 |
T |
|
| Q |
319 |
attatagtaatattaaaggagacagtaaaaatgtc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5421860 |
attatagtaatattaaaggagacagtaaaaatgtc |
5421894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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