View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_13 (Length: 385)
Name: NF15773_low_13
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 42652833 - 42652587
Alignment:
| Q |
18 |
gtaacaattagcaaaatccatagtagtggttttttccattgaaaccatttaatctgtttaggtcgtaacaaaacttagaacttttcgctaatcatgtcaa |
117 |
Q |
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| T |
42652833 |
gtaacaattagcaaaatccatagtagtggttttttccattgaaaccatttaatctgtttaggtcgtaacaaaacttagaacttttcgctaatcatgtcaa |
42652734 |
T |
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| Q |
118 |
agtgtttggatcaggagtaccttttattacattttttcatttatagcttaaatttagggacaaaccactaatgctaagtttattataaattcacttgtat |
217 |
Q |
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| T |
42652733 |
agtgtttggatcaggagtaccttttattacattttttcatttatagcttaaatttagggacaaaccactaatgctaagtttattataaattcacttgtat |
42652634 |
T |
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| Q |
218 |
gtttggagattatactgctgttactgtgaccaaattcactctgtaca |
264 |
Q |
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| T |
42652633 |
gtttggagattatactgctgttactgtgaccaaattcactctgtaca |
42652587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 379
Target Start/End: Complemental strand, 42652509 - 42652474
Alignment:
| Q |
344 |
aatgttttactgatcctgtcctgcatcctatgctac |
379 |
Q |
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| T |
42652509 |
aatgttttactgatcctgtcctgcatccaatgctac |
42652474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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