View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15773_low_15 (Length: 371)
Name: NF15773_low_15
Description: NF15773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15773_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 4846461 - 4846737
Alignment:
| Q |
25 |
cataatccagatatataatttgcttaaaaagggttagtctgatactcacaaaaattgttagtcatgtgctttgtgaaacatacatagagtgataagctgt |
124 |
Q |
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| T |
4846461 |
cataatccagatataaaatttgcttaaaaagggttagtctgatactcacaaaaattgttagtcatgtgctttgtgaaacatacatagagtgataagctgt |
4846560 |
T |
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| Q |
125 |
cccacattataaataaagcgga---------------------caacacattttcattcatcaaagaatagatgcatgctatcagattgtatcacatgtt |
203 |
Q |
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| T |
4846561 |
cccacattataaataaagcggacaacacattttcaatgtactgcaacacattttcattcatcaaagaatagatgcatgctatcagattgtatcacatgtt |
4846660 |
T |
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| Q |
204 |
gcttttaaaatgttggtccaatttaatagagctacactcttcgttttggaataggaaaatacaattaaggaattgga |
280 |
Q |
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| T |
4846661 |
gcttttaaaatgttggtccaatttaatagggctacactcttcgttttggaataggaaaataaaattaaggaattgga |
4846737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 4846754 - 4846818
Alignment:
| Q |
296 |
ctattatattatcattttgatccggcaataannnnnnnnnagaatagtaaatttgatttcatatt |
360 |
Q |
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| T |
4846754 |
ctattatattatcattttgatccggcaatgatttttttttagaatggtaaatttgatttcatatt |
4846818 |
T |
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